Difference between revisions of "Part:BBa K4195038"
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| − | + | ===Biology=== | |
| + | r''Lv''APN1 | ||
| − | + | ''LvAPN1'', a protein from the aminopeptidase N family, was identified in ''Litopenaeus vannamei'' hemocytes as a receptor for VP<sub>AHPND</sub> toxin PirA and PirB. It is constitutively expressed in the stomach, hepatopancreas, and hemocytes of healthy shrimp, while the increased expression of which was found after the shrimp were challenged with the VP<sub>AHPND</sub> toxin. Silencing of ''Lv''APN1 prevents the VP<sub>AHPND</sub> toxin from passing through the cell membrane (''1''). | |
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| + | r''Lv''APN1 is a truncated form of ''Lv''APN1 (residues 205-591) that composes of a crystal insecticidal (Cry) toxin binding region and the active site of peptidase-M1 domain, which was reported to directly bind to both PirA and PirB toxins. What’s more, there is no glycosylation sites in r''Lv''APN1, which makes it easier to obtain the purified protein by using prokaryotic expression system (such as ''E. coli''). | ||
| + | ===Usage and design=== | ||
| + | In order to purify r''Lv''APN1, a His-tag (6×His) was added to the C-terminal of r''Lv''APN1. We used arabinose-inducible system to express the recombinant r''Lv''APN1-his then constructed composite part <partinfo>BBa_K4195134</partinfo>. | ||
| + | ===Characterization=== | ||
| + | ====Identification==== | ||
| + | After the first time of purification, we found that the protein was poorly expressed and mostly formed inclusion body, so we did not obtain the target protein. Therefore, we cloned this part into the expression vector pET-28a(+) ''via'' Gibson assembly, then transformed the correct plasmid into ''E. coli'' BL21(DE3). When constructing this circuit, colony PCR and gene sequencing were used to verify that the transformatants were correct. Target bands (1386 bp) can be observed at the position between 1000 and 1500 bp (Fig. 1). | ||
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Revision as of 19:18, 10 October 2022
Biology
rLvAPN1
LvAPN1, a protein from the aminopeptidase N family, was identified in Litopenaeus vannamei hemocytes as a receptor for VPAHPND toxin PirA and PirB. It is constitutively expressed in the stomach, hepatopancreas, and hemocytes of healthy shrimp, while the increased expression of which was found after the shrimp were challenged with the VPAHPND toxin. Silencing of LvAPN1 prevents the VPAHPND toxin from passing through the cell membrane (1).
rLvAPN1 is a truncated form of LvAPN1 (residues 205-591) that composes of a crystal insecticidal (Cry) toxin binding region and the active site of peptidase-M1 domain, which was reported to directly bind to both PirA and PirB toxins. What’s more, there is no glycosylation sites in rLvAPN1, which makes it easier to obtain the purified protein by using prokaryotic expression system (such as E. coli).
Usage and design
In order to purify rLvAPN1, a His-tag (6×His) was added to the C-terminal of rLvAPN1. We used arabinose-inducible system to express the recombinant rLvAPN1-his then constructed composite part BBa_K4195134.
Characterization
Identification
After the first time of purification, we found that the protein was poorly expressed and mostly formed inclusion body, so we did not obtain the target protein. Therefore, we cloned this part into the expression vector pET-28a(+) via Gibson assembly, then transformed the correct plasmid into E. coli BL21(DE3). When constructing this circuit, colony PCR and gene sequencing were used to verify that the transformatants were correct. Target bands (1386 bp) can be observed at the position between 1000 and 1500 bp (Fig. 1).
[[]]
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 847
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 711
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 760
- 1000COMPATIBLE WITH RFC[1000]