Difference between revisions of "Part:BBa K4245001:Design"
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===Design Notes===
 
===Design Notes===
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This part works identically to BBa_K4245002, a composite part producing iSpinach, and BBa_K4245003, a composite part producing iSpinach-D5-G30-A32; the only difference being the aptamer produced. This disparity allows accurate comparison of the basic aptamer parts.  
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This part works identically to BBa_K4245002, a composite part producing iSpinach, and BBa_K4245003, a composite part producing iSpinach-D5-G30-A32; the only difference is the aptamer produced. This disparity allows accurate comparison of the basic aptamer parts.
  
 
===Source===
 
===Source===

Revision as of 18:56, 9 October 2022


Spinach aptamer with LacI repression


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 361
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

This part works identically to BBa_K4245002, a composite part producing iSpinach, and BBa_K4245003, a composite part producing iSpinach-D5-G30-A32; the only difference is the aptamer produced. This disparity allows accurate comparison of the basic aptamer parts.

Source

The part was acquired as synthesized sequences from IDT and Twist Bioscience.

References

Neubacher, S., & Hennig, S. (2018). RNA structure and cellular applications of fluorescent light-up Aptamers. Angewandte Chemie International Edition, 58(5), 1266–1279. https://doi.org/10.1002/anie.201806482

Paige, J. S., Wu, K. Y., & Jaffrey, S. R. (2011). RNA mimics of green fluorescent protein. Science, 333(6042), 642–646. https://doi.org/10.1126/science.1207339

Pothoulakis, G., Ceroni, F., Reeve, B., & Ellis, T. (2013). The spinach RNA aptamer as a characterization tool for synthetic biology. ACS Synthetic Biology, 3(3), 182–187. https://doi.org/10.1021/sb400089c