Difference between revisions of "Part:BBa K4343084"

 
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<partinfo>BBa_K4343084 short</partinfo>
 
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PpElo9 gene encodes &#8710;-9 elongase from Pavlova pinguis. This enzyme can catalyze the elongation of C18:2 to C20:2 in Y. lipolytica.
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PpElo9 gene encodes ∆-9 elongase from Pavlova pinguis. This enzyme can catalyze the elongation of C18:2 to C20:2 in Y. lipolytica.
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===Characterisation===
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We integrated PpElo9 controlled by the TEF promoter to the SCP2 site of the genome of Y. lipolytica through this segment. Then we detected the proportion of C18:2 and C20:2 by gas chromatography (GC) and test the activity of ∆-9 elongase according to the results.
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<center>https://static.igem.wiki/teams/4343/wiki/puc-huh-scp2-ppelo9-map.png</center>
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===Result===
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C18:2 produced by them decreased from 62.7% to 34%, and C20:2 produced by them reached 32%. (Fig: Po1f-11)
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<center>https://static.igem.wiki/teams/4343/wiki/part-6.jpg</center>
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Latest revision as of 12:09, 9 October 2022


pUC-HUH-Scp2-PpElo9

PpElo9 gene encodes ∆-9 elongase from Pavlova pinguis. This enzyme can catalyze the elongation of C18:2 to C20:2 in Y. lipolytica.

Characterisation

We integrated PpElo9 controlled by the TEF promoter to the SCP2 site of the genome of Y. lipolytica through this segment. Then we detected the proportion of C18:2 and C20:2 by gas chromatography (GC) and test the activity of ∆-9 elongase according to the results.

puc-huh-scp2-ppelo9-map.png

Result

C18:2 produced by them decreased from 62.7% to 34%, and C20:2 produced by them reached 32%. (Fig: Po1f-11)

part-6.jpg

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 6489
    Illegal XhoI site found at 1431
    Illegal XhoI site found at 3465
    Illegal XhoI site found at 3498
    Illegal XhoI site found at 7844
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 3653
    Illegal NgoMIV site found at 7021
    Illegal AgeI site found at 889
    Illegal AgeI site found at 1543
    Illegal AgeI site found at 1642
    Illegal AgeI site found at 2003
    Illegal AgeI site found at 4706
    Illegal AgeI site found at 5067
    Illegal AgeI site found at 6209
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1
    Illegal BsaI site found at 1546
    Illegal BsaI site found at 2183
    Illegal BsaI site found at 5247
    Illegal BsaI site found at 5784
    Illegal BsaI site found at 6212
    Illegal BsaI site found at 6796
    Illegal BsaI.rc site found at 401
    Illegal BsaI.rc site found at 1540
    Illegal BsaI.rc site found at 6206
    Illegal BsaI.rc site found at 7047
    Illegal BsaI.rc site found at 7317
    Illegal BsaI.rc site found at 8479
    Illegal BsaI.rc site found at 8863
    Illegal SapI.rc site found at 1908
    Illegal SapI.rc site found at 4972