Difference between revisions of "Part:BBa K4387005"
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==Characterization==
 
==Characterization==
  
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We measured the GFP expression upon NO induction with a plate reader over 16 hours. Below is the dose-response curve of pNorVβ, measured in a plate reader. For all measurements, we used the following conditions:
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We measured the GFP expression upon NO induction with a plate reader over 16 hours. Below is the dose-response curve of pNorVβ, measured in a plate reader.  
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For all measurements, we used the following conditions:
 
<ul>
 
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<li>Overnight growth and experiment were done in minimal M9 medium supplemented with Ampicillin at 37°C
 
<li>Overnight growth and experiment were done in minimal M9 medium supplemented with Ampicillin at 37°C
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<li>GFP emission was normalized to OD600.</li>
 
<li>GFP emission was normalized to OD600.</li>
 
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</ul>
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If high GFP expression is required, but some leakiness does not matter much, we recommend choosing <html><a href="https://parts.igem.org/Part:BBa_K4387006">BBa_K4387006</a></html>. If lower leakiness is essential, but GFP expression does not need to be very high, we recommend using parts <html><a href="https://parts.igem.org/Part:BBa_K4387005">BBa_K4387005</a></html> or <html><a href="https://parts.igem.org/Part:BBa_K4387007">BBa_K4387007</a></html> instead.
  
  

Revision as of 08:56, 9 October 2022

Nitric Oxide Sensing Genetic Circuit With One Ribosomal Binding Site

Usage and Biology

This composite part consists of the inducible pNorVβ promoter, a superfolder GFP preceded by one strong ribosomal binding site (BBa_B0034), the NorR regulator, and a double forward terminator. We chose a high-copy backbone from Twist Bioscience for this part. Due to the competitive binding of the activated and inactivated NorR on the promoter, we decided on this construct with a positive feedback loop that adjusted the levels of NorR based on the amount of nitric oxide present [1]. The presence of nitric oxide would activate pNorVβ to induce GFP and NorR expression. Thereby, we ensure that high amounts of NorR will be produced only when NO is present.

This construct was tested in the bacterial strain E.coli Nissle 1917.


Characterization

We measured the GFP expression upon NO induction with a plate reader over 16 hours. Below is the dose-response curve of pNorVβ, measured in a plate reader. For all measurements, we used the following conditions:

  • Overnight growth and experiment were done in minimal M9 medium supplemented with Ampicillin at 37°C Start of experiment in 96 well plate at an OD600 of 0.05.
  • Settings for GFP measurements: excitation at 485nm, emission at 520nm.
  • Every condition was measured over three technical and three biological replicates.
  • GFP emission was normalized to OD600.

If high GFP expression is required, but some leakiness does not matter much, we recommend choosing BBa_K4387006. If lower leakiness is essential, but GFP expression does not need to be very high, we recommend using parts BBa_K4387005 or BBa_K4387007 instead.


Measurements

Figure 1: Induction response of the pNorVβ promoter to different DETA/NO concentrations with respect to time.
Figure 2: Dose response of the pNorVβ promoter at different DETA/NO concentrations.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 703
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


References

  • [1] Xiaoyu J. Chen, Baojun Wang, Ian P. Thompson, and Wei E. Huang et al. Rational Design and Characterization of Nitric Oxide Biosensors in E. coli Nissle 1917 and Mini SimCells ACS Synthetic Biology 2021 10 (10), 2566-2578 DOI: 10.1021/acssynbio.1c00223