Difference between revisions of "Part:BBa K4408005:Design"

 
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===Design Notes===
 
===Design Notes===
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It can be bounded with SpyTag-linker 1-hbd (BBa_K4408006) to enhance the production of butanol. Thl and hbd are two key enzymes in the metabolic pathway of chlostridium butyricum to transform Acetyl-CoA to 3-Hydroxybutytyl-CoA. By linking these two enzymes together, we can improve the utilization of reagants and the reaction rate of the transformation, and thus improve the production of butanol and butyl acid.  
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Enzyme encoded by thl catalyzes acetyl-CoA into acetoacetyl-CoA which is further transformed to 3-hydroxybutytyl-CoA by hbd encoded protein in the synthesis pathway of butyl acid in Clostridium tyrobutyricum. We designed SpyCatcher-Linker 1-thl and SpyTag-Linker 1-hbd (BBa_K4408006) to link these two enzymes together through the SpyCatcher/SpyTag system. In this way, we can improve the utilization of reagents and the reaction rate of the transformation from acetyl-CoA to 3-hydroxybutytyl-CoA, enhancing the production of butyl acid.
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===Source===
 
===Source===
  
 
Linker 1 is based on part BBa_K4408003
 
Linker 1 is based on part BBa_K4408003
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thl is based on part BBa_K3443003
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thl is based on part BBa_K1583012
 
SpyCatcher is based on part BBa_K3329016
 
SpyCatcher is based on part BBa_K3329016
  
 
===References===
 
===References===

Latest revision as of 07:33, 2 October 2022


thl modified by oligopeptide SpyCatcher


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1076
    Illegal SapI.rc site found at 900


Design Notes

Enzyme encoded by thl catalyzes acetyl-CoA into acetoacetyl-CoA which is further transformed to 3-hydroxybutytyl-CoA by hbd encoded protein in the synthesis pathway of butyl acid in Clostridium tyrobutyricum. We designed SpyCatcher-Linker 1-thl and SpyTag-Linker 1-hbd (BBa_K4408006) to link these two enzymes together through the SpyCatcher/SpyTag system. In this way, we can improve the utilization of reagents and the reaction rate of the transformation from acetyl-CoA to 3-hydroxybutytyl-CoA, enhancing the production of butyl acid.

Source

Linker 1 is based on part BBa_K4408003 thl is based on part BBa_K1583012 SpyCatcher is based on part BBa_K3329016

References