Difference between revisions of "Part:BBa K3871004"

 
 
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== Description ==
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<html>
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  <p>
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    mCherry is a red fluorescent protein used as a reporter derived from the
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    fluorophore DsRed, which was originally isolated from
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    <i>Discosoma</i> sea anemones. It is commonly used due to its colour and
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    photostability compared to other monomeric fluorophores.
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  </p>
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  <p>
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    This part is a variant of mCherry, the sequence of which was modified to
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    optimize its expression in <i>Bacillus subtilis</i> against <i>E. coli</i> using the
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    <a href="https://2021.igem.org/Team:TAU_Israel" style="padding-right: 0px;">Communique</a> tool developed
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    by the 2021 TAU Israel team. This specific variant was optimized based on
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    typical decoding rate difference between <i>B. subtilis</i> and <i>E. coli</i>. You may
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    read more about the optimization model
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    <a href="https://2021.igem.org/Team:TAU_Israel/Model" style="padding-right: 0px;">here.</a>
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  </p>
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<br>
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<p>For more information on this part, please consult the 2021 TAU Israel wiki results page found <a href = "https://2021.igem.org/Team:TAU_Israel/Results" style="padding-right: 0px;">here.</a> Information about experimental procedures can be found <a href = "https://2021.igem.org/Team:TAU_Israel/Notebook" style="padding-right: 0px;">here</a> and <a href = "https://2021.igem.org/Team:TAU_Israel/Proof_Of_Concept" style="padding-right: 0px;">here.</a></p>
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<partinfo>BBa_K3871004 short</partinfo>
 
<partinfo>BBa_K3871004 short</partinfo>
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===Usage and Biology===
 
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<span class='h3bb'>Sequence and Features</span>
 
 
<partinfo>BBa_K3871004 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3871004 SequenceAndFeatures</partinfo>
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===Functional Parameters===
 
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<partinfo>BBa_K3871004 parameters</partinfo>
 
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Latest revision as of 00:31, 22 October 2021

Description

mCherry is a red fluorescent protein used as a reporter derived from the fluorophore DsRed, which was originally isolated from Discosoma sea anemones. It is commonly used due to its colour and photostability compared to other monomeric fluorophores.

This part is a variant of mCherry, the sequence of which was modified to optimize its expression in Bacillus subtilis against E. coli using the Communique tool developed by the 2021 TAU Israel team. This specific variant was optimized based on typical decoding rate difference between B. subtilis and E. coli. You may read more about the optimization model here.


For more information on this part, please consult the 2021 TAU Israel wiki results page found here. Information about experimental procedures can be found here and here.


mCherry, TDR-D optimized for Bacillus subtilis


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 43
    Illegal EcoRI site found at 91
    Illegal EcoRI site found at 364
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 43
    Illegal EcoRI site found at 91
    Illegal EcoRI site found at 364
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 43
    Illegal EcoRI site found at 91
    Illegal EcoRI site found at 364
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 43
    Illegal EcoRI site found at 91
    Illegal EcoRI site found at 364
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 43
    Illegal EcoRI site found at 91
    Illegal EcoRI site found at 364
  • 1000
    COMPATIBLE WITH RFC[1000]