Difference between revisions of "Part:BBa K3739101"
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<partinfo>BBa_K3739101 short</partinfo> | <partinfo>BBa_K3739101 short</partinfo> | ||
| − | This season, we have improved the function of INPNC expressed by the gene in brick of BBa_K3332016. It is tricky to verify whether a protein has been successfully displayed on the surface of E. coli. INPNC is a membrane protein commonly used for the surface display system of E. coli, through which the SpyCatcher protein could anchor on the membranes. At the same time, SpyTag in the environment could bind to SpyCatcher by forming an isopeptide bond. Based on this design, we aim at improving the usability and success of targeted protein anchoring in the surface display system. A new composite part (<partinfo>BBa_K3739103</partinfo>) was constructed to express the protein of HisTag-SpyTag-GFP. | + | This season, we have improved the function of INPNC expressed by the gene in brick of <partinfo>BBa_K3332016</partinfo>. It is tricky to verify whether a protein has been successfully displayed on the surface of E. coli. INPNC is a membrane protein commonly used for the surface display system of E. coli, through which the SpyCatcher protein could anchor on the membranes. At the same time, SpyTag in the environment could bind to SpyCatcher by forming an isopeptide bond. Based on this design, we aim at improving the usability and success of targeted protein anchoring in the surface display system. A new composite part (<partinfo>BBa_K3739103</partinfo>) was constructed to express the protein of HisTag-SpyTag-GFP. |
===Biology=== | ===Biology=== | ||
| − | Ice nucleoprotein is an anchor protein from Pseudomonas syringae. It can anchor its passenger protein to the cell membrane. N and C terminal of ice nucleoprotein, which is named after INPNC, can also anchor passenger protein fused with it to the cell membrane. SpyTag is a peptide fragment, which could steadily bind to SpyCatcher by forming an isopeptide bond. Thus, SpyTag was fused with GFP and | + | Ice nucleoprotein is an anchor protein from ''Pseudomonas syringae''. It can anchor its passenger protein to the cell membrane. N and C terminal of ice nucleoprotein, which is named after INPNC, can also anchor passenger protein fused with it to the cell membrane. SpyTag is a peptide fragment, which could steadily bind to SpyCatcher by forming an isopeptide bond. Thus, SpyTag was fused with GFP and HisTag for surface displays indicate and protein purification, respectively. |
===Usage=== | ===Usage=== | ||
| + | Here, we construct the genetic circuit to express Histag-SpyTag-GFP on the surface of ''E. coli'', and characteristic the effect. The composite part <partinfo>BBa_K3739103</partinfo> constructed was introduced into the backbone plasmid through standard assembly and transformed into ''E. coli'' BL21 (DE3). The positive clones were selected, verified and cultivated. | ||
| − | + | ===Characterization=== | |
| − | + | ||
| − | === | + | |
====1. Identification==== | ====1. Identification==== | ||
| − | |||
PCR was employed to verify the correctness of the plasmid constructed. As shown in Fig. 1, the targeted band (866 bp) could be observed at the position around 900 bp of the marker band. | PCR was employed to verify the correctness of the plasmid constructed. As shown in Fig. 1, the targeted band (866 bp) could be observed at the position around 900 bp of the marker band. | ||
| − | + | [[File:T--XMU-China--K3739103-1.png|500px]] | |
| − | '''Fig. 1.''' DNA gel electrophoresis of PCR products of HisTag-SpyTag-GFP (Xbal I & Pst I sites) | + | '''Fig. 1.''' DNA gel electrophoresis of PCR products of HisTag-SpyTag-GFP (''Xbal'' I & ''Pst'' I sites) |
====2. Proof of the expression==== | ====2. Proof of the expression==== | ||
| − | J23100 promoter was employed to start the expression of HisTag-SpyTag-GFP (<partinfo>BBa_K3739103</partinfo>) in E. coli. After being selected and verified, the positive colony was cultivated overnight to express the fusion protein of HisTag-SpyTag-GFP. | + | J23100 promoter was employed to start the expression of HisTag-SpyTag-GFP (<partinfo>BBa_K3739103</partinfo>) in ''E. coli''. After being selected and verified, the positive colony was cultivated overnight to express the fusion protein of HisTag-SpyTag-GFP. |
====3. Bonding ability to SpyCatcher==== | ====3. Bonding ability to SpyCatcher==== | ||
| Line 31: | Line 29: | ||
1 mL ''E. coli'' BL21(DE3) culture solution, which has express fusion membrane protein of INPNC-Spycatcher, was used for the following experiment. Another engineered ''E. coli'' BL21(DE3) with HisTag-Spytag-GFP was also cultured, and harvest the bacteria in sediment after being centrifuged with the condition of 8000 g, 10 min, and 4°C. After broken and centrifuged, the supernatant solution with HisTag-Spytag-GFP was obtained and incubated with the ''E. coli'' BL21(DE3) culture solution (express INPNC-Spycatcher) at 37 °C in the shaker. Samples were taken every two hours. After centrifugation, the fluorescence of 50 μL supernatant of each sample was measured (λex = 475 nm, λem = 545 nm), in which the bacteria incubated with PBS solution was set as control. At the same time, the fluorescence confocal microscope has also been employed to verify the bonding of SpyTag to INPNC-SpyCatcher (Fig. 2). After incubation, the decrease of fluorescence intensity of supernatant indicated the binding of HisTag-SpyTag-GFP to the INPNC-HisTag-SpyCatcher displayed in the surface of ''E. coli'' BL21(DE3), while the fluorescence intensity in the control group changes slightly (Fig. 3). | 1 mL ''E. coli'' BL21(DE3) culture solution, which has express fusion membrane protein of INPNC-Spycatcher, was used for the following experiment. Another engineered ''E. coli'' BL21(DE3) with HisTag-Spytag-GFP was also cultured, and harvest the bacteria in sediment after being centrifuged with the condition of 8000 g, 10 min, and 4°C. After broken and centrifuged, the supernatant solution with HisTag-Spytag-GFP was obtained and incubated with the ''E. coli'' BL21(DE3) culture solution (express INPNC-Spycatcher) at 37 °C in the shaker. Samples were taken every two hours. After centrifugation, the fluorescence of 50 μL supernatant of each sample was measured (λex = 475 nm, λem = 545 nm), in which the bacteria incubated with PBS solution was set as control. At the same time, the fluorescence confocal microscope has also been employed to verify the bonding of SpyTag to INPNC-SpyCatcher (Fig. 2). After incubation, the decrease of fluorescence intensity of supernatant indicated the binding of HisTag-SpyTag-GFP to the INPNC-HisTag-SpyCatcher displayed in the surface of ''E. coli'' BL21(DE3), while the fluorescence intensity in the control group changes slightly (Fig. 3). | ||
| − | + | [[File:T--XMU-China--K3739100-3.png|800px]] | |
'''Fig. 2.''' The bonding of INPNC-HisTag-SpyCatcher to HisTag-SpyTag-GFP observed from fluorescence confocal microscope. | '''Fig. 2.''' The bonding of INPNC-HisTag-SpyCatcher to HisTag-SpyTag-GFP observed from fluorescence confocal microscope. | ||
| − | + | [[File:T--XMU-China--K3739100-4.png|800px]] | |
'''Fig. 3.''' Time course of fluorescence intensity changes of the supernatant. | '''Fig. 3.''' Time course of fluorescence intensity changes of the supernatant. | ||
| + | |||
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Latest revision as of 22:51, 21 October 2021
his-SpyTag-GFP
This season, we have improved the function of INPNC expressed by the gene in brick of BBa_K3332016. It is tricky to verify whether a protein has been successfully displayed on the surface of E. coli. INPNC is a membrane protein commonly used for the surface display system of E. coli, through which the SpyCatcher protein could anchor on the membranes. At the same time, SpyTag in the environment could bind to SpyCatcher by forming an isopeptide bond. Based on this design, we aim at improving the usability and success of targeted protein anchoring in the surface display system. A new composite part (BBa_K3739103) was constructed to express the protein of HisTag-SpyTag-GFP.
Biology
Ice nucleoprotein is an anchor protein from Pseudomonas syringae. It can anchor its passenger protein to the cell membrane. N and C terminal of ice nucleoprotein, which is named after INPNC, can also anchor passenger protein fused with it to the cell membrane. SpyTag is a peptide fragment, which could steadily bind to SpyCatcher by forming an isopeptide bond. Thus, SpyTag was fused with GFP and HisTag for surface displays indicate and protein purification, respectively.
Usage
Here, we construct the genetic circuit to express Histag-SpyTag-GFP on the surface of E. coli, and characteristic the effect. The composite part BBa_K3739103 constructed was introduced into the backbone plasmid through standard assembly and transformed into E. coli BL21 (DE3). The positive clones were selected, verified and cultivated.
Characterization
1. Identification
PCR was employed to verify the correctness of the plasmid constructed. As shown in Fig. 1, the targeted band (866 bp) could be observed at the position around 900 bp of the marker band.
Fig. 1. DNA gel electrophoresis of PCR products of HisTag-SpyTag-GFP (Xbal I & Pst I sites)
2. Proof of the expression
J23100 promoter was employed to start the expression of HisTag-SpyTag-GFP (BBa_K3739103) in E. coli. After being selected and verified, the positive colony was cultivated overnight to express the fusion protein of HisTag-SpyTag-GFP.
3. Bonding ability to SpyCatcher
1 mL E. coli BL21(DE3) culture solution, which has express fusion membrane protein of INPNC-Spycatcher, was used for the following experiment. Another engineered E. coli BL21(DE3) with HisTag-Spytag-GFP was also cultured, and harvest the bacteria in sediment after being centrifuged with the condition of 8000 g, 10 min, and 4°C. After broken and centrifuged, the supernatant solution with HisTag-Spytag-GFP was obtained and incubated with the E. coli BL21(DE3) culture solution (express INPNC-Spycatcher) at 37 °C in the shaker. Samples were taken every two hours. After centrifugation, the fluorescence of 50 μL supernatant of each sample was measured (λex = 475 nm, λem = 545 nm), in which the bacteria incubated with PBS solution was set as control. At the same time, the fluorescence confocal microscope has also been employed to verify the bonding of SpyTag to INPNC-SpyCatcher (Fig. 2). After incubation, the decrease of fluorescence intensity of supernatant indicated the binding of HisTag-SpyTag-GFP to the INPNC-HisTag-SpyCatcher displayed in the surface of E. coli BL21(DE3), while the fluorescence intensity in the control group changes slightly (Fig. 3).
Fig. 2. The bonding of INPNC-HisTag-SpyCatcher to HisTag-SpyTag-GFP observed from fluorescence confocal microscope.
Fig. 3. Time course of fluorescence intensity changes of the supernatant.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 744
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 142
- 1000COMPATIBLE WITH RFC[1000]