Difference between revisions of "Part:BBa K3982026"

Latest revision as of 15:32, 21 October 2021

CODE M Standard Construct S1

This construct has been used in Project CODE M by Team IISER_Berhampur 2021. The aim of this project is to combat Multidrug-Resistant Tuberculosis (MDR-TB) with our diagnostic kit CODE M using mobile phone microscopy. Mutant strains of Mycobacterium tuberculosis, the causative agent of MDR-TB (which confer drug resistance towards two main drugs for TB cure - isoniazid and rifampicin) are detected through high-fidelity SNP detection using CRISPR/Cas technology. Here we used Cas14a1 (also called as Un1Cas12f1) as the RNA guided nuclease with our set of customised CODE M sgRNAs.

This construct has been assembled using various basic parts in standard plasmid backbone pSB1C3 to synthesize the Cas14a1 protein in-vitro. The purpose of this part is to check the expression of Cas14a1 gene using some common regulatory sequences.

Usage and Biology

CRISPR/Cas technology has been derived from the CRISPR/Cas systems present in archaea and bacteria. They function as an adaptive immune system against invading foreign DNA and RNA. This technology has grown in the past several years with a wide range of applications. There are different types of Cas proteins such as Cas9, Cas12, Cas13 as well as Cas14. All of them are RNA guided nucleases - with a crRNA and tracrRNA or a sgRNA.

Cas14 is highly specific and its miniature size makes delivery easy. It can readily form complex with sgRNA. Also, the mode of SNP detection is PAM independent, which means it does not require a PAM sequence to interact with DNA/RNA.

Methodology

This construct is to be used to test and compare the efficiency of gene expression in CODE M Construct C1 (Part BBa K3982025).

Sequence and Features

Assembly Compatibility:

10
INCOMPATIBLE WITH RFC[10]
Illegal EcoRI site found at 1457
Illegal PstI site found at 247
Illegal PstI site found at 413
12
INCOMPATIBLE WITH RFC[12]
Illegal EcoRI site found at 1457
Illegal PstI site found at 247
Illegal PstI site found at 413
21
INCOMPATIBLE WITH RFC[21]
Illegal EcoRI site found at 1457
Illegal BamHI site found at 1051
23
INCOMPATIBLE WITH RFC[23]
Illegal EcoRI site found at 1457
Illegal PstI site found at 247
Illegal PstI site found at 413
25
INCOMPATIBLE WITH RFC[25]
Illegal EcoRI site found at 1457
Illegal PstI site found at 247
Illegal PstI site found at 413
Illegal AgeI site found at 707
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K3982026 short</partinfo>
-CODE M - Construct - C2
+This construct has been used in Project CODE M by [https://2021.igem.org/Team:IISER_Berhampur Team IISER_Berhampur 2021].
+The aim of this project is to combat Multidrug-Resistant Tuberculosis (MDR-TB) with our diagnostic kit CODE M using mobile phone microscopy. Mutant strains of Mycobacterium tuberculosis, the causative agent of MDR-TB (which confer drug resistance towards two main drugs for TB cure - isoniazid and rifampicin) are detected through high-fidelity SNP detection using CRISPR/Cas technology. Here we used Cas14a1 (also called as Un1Cas12f1) as the RNA guided nuclease with our set of customised CODE M sgRNAs.
+This construct has been assembled using various basic parts in standard plasmid backbone pSB1C3 to synthesize the Cas14a1 protein in-vitro. The purpose of this part is to check the expression of Cas14a1 gene using some common regulatory sequences.
-<!-- Add more about the biology of this part here
 ===Usage and Biology===
+CRISPR/Cas technology has been derived from the CRISPR/Cas systems present in archaea and bacteria. They function as an adaptive immune system against invading foreign DNA and RNA. This technology has grown in the past several years with a wide range of applications. There are different types of Cas proteins such as Cas9, Cas12, Cas13 as well as Cas14. All of them are RNA guided nucleases - with a crRNA and tracrRNA or a sgRNA.
+Cas14 is highly specific and its miniature size makes delivery easy. It can readily form complex with sgRNA. Also, the mode of SNP detection is PAM independent, which means it does not require a PAM sequence to interact with DNA/RNA.
+===Methodology===
+This construct is to be used to test and compare the efficiency of gene expression in CODE M Construct C1 (Part [https://parts.igem.org/Part:BBa_K3982025 BBa K3982025]).
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