Difference between revisions of "Part:BBa K3714004"

Line 11: Line 11:
 
<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K3714004 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3714004 SequenceAndFeatures</partinfo>
<br/>
+
<hr/>
By introducing mutations in loop Ⅰ and loop Ⅱ[1], we achieved an aptazyme with higher responsing fold and less leakage (Fig.1).  
+
By introducing mutations in loop Ⅰ and loop Ⅱ[1], we achieved an aptazyme with higher responsing fold and less leakage (Fig.1). Our aptazyme exhibits a 2-fold change of cleavage proportion under 10μM at ~1mg/ml (0.125x dilution of saturated solution at room temperature) while the origin apatazyme (BBa_J119449) shows only 1.3-fold change.
 
<center>[[File:K3714004.png]]</center>
 
<center>[[File:K3714004.png]]</center>
  

Revision as of 12:48, 21 October 2021


Improved theophylline biosensor

An improved aptazyme responsing to theophylline, which means its self-cleaving activity can be inhibited by adding theophylline. This aptazyme shows higher sensibility than an existing part (BBa_J119449).

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

By introducing mutations in loop Ⅰ and loop Ⅱ[1], we achieved an aptazyme with higher responsing fold and less leakage (Fig.1). Our aptazyme exhibits a 2-fold change of cleavage proportion under 10μM at ~1mg/ml (0.125x dilution of saturated solution at room temperature) while the origin apatazyme (BBa_J119449) shows only 1.3-fold change.

K3714004.png
Figure 1 | Improvement of an existing theophylline aptazyme. a.Cleavage properties of two aptazymes under different theophylline concentration. The sequences were synthesized and transcribed in vitro. The number above each lane means dilution fold of saturated theophylline aqueous solution at 25℃. b. A diagram showing the intensity percentage of the cleaved band of each lane in a. Intensity was measured by ImageJ.