Difference between revisions of "Part:BBa K3829010"

Revision as of 02:22, 21 October 2021

P-ss-yeGFP-V5tag-Anchor protein 4609-T

Our part BBa_K33829010 is a recombinant yeGFP improved from the part reporter GFP BBa_K3402000 (iGEM20_Jiangnan_China). We optimized the codon and added a stronger promoter BBa_K3829001 and terminator BBa_K3829000.

Characterization

Construction of plasmid Ts-CAT2-gda324-URA3-P-SS-yeGFP3-V5-4609-T

In our project, yeGFP was used to screen anchored proteins.

Fig.1 Structure of Ts-CAT2-gda324-URA3-P-SS-yeGFP3-V5-4609-T

References

1.Eisenhaber, Birgit, et al. "A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe." Journal of molecular biology 337.2 (2004): 243-253.

2.Möller, Steffen, Michael DR Croning, and Rolf Apweiler. "Evaluation of methods for the prediction of membrane spanning regions." Bioinformatics 17.7 (2001): 646-653.

3.Smith MR, Khera E, Wen F. “Engineering Novel and Improved Biocatalysts by Cell Surface Display.” Ind Eng Chem Res, volume 53, issue 16, 29 April 2015, pp. 4021-4032.

4.Tanaka T, Yamada R, Ogino C, Kondo A. “Recent Developments in Yeast Cell Surface Display toward Extended Applications in Biotechnology.” Appl Microbiol Biotechnol, volume 75, issue 3, August 2012, pp. 577-591.

5.Andreu C, Del Olmo ML. “Yeast Arming Systems: pros and cons of different protein anchors and other elements required for display.” Appl Microbiol Biotechnol, volume 102, issue 6, Mar 2018, pp. 2543-2561.

Sequence and Features BBa_K3829010 SequenceAndFeatures

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K3829010 short</partinfo>
-The composite Parts is used to screen for anchored proteins. SS secretes GFP out of the cell, while anchor proteins anchor it on the cell surface. So green fluorescence is designed to appear on the cell surface.
+<html>
+<p>Our part BBa_K33829010 is a recombinant yeGFP improved from the part reporter GFP <a href="https://parts.igem.org/Part:BBa_K3402000">BBa_K3402000</a> (iGEM20_Jiangnan_China). We optimized the codon and added a stronger promoter <a href="https://parts.igem.org/Part:BBa_K3829001">BBa_K3829001</a> and terminator <a href="https://parts.igem.org/Part:BBa_K3829000">BBa_K3829000</a>. </p>
+<h2>Characterization</h2>
+<h3>Construction of plasmid Ts-CAT2-gda324-URA3-P-SS-yeGFP3-V5-4609-T</h3>
+<p>In our project, yeGFP was used to screen anchored proteins.</p>
+<img src="https://2021.igem.org/wiki/images/d/d9/T--IvyMaker-China--Lab-05.jpg" style = "width:80%;">
+<br/><b>Fig.1</b> Structure of Ts-CAT2-gda324-URA3-P-SS-yeGFP3-V5-4609-T
+<br/>
+<h3>References</h3>
+<p>1.Eisenhaber, Birgit, et al. "A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe." Journal of molecular biology 337.2 (2004): 243-253.</p>
+<p>2.Möller, Steffen, Michael DR Croning, and Rolf Apweiler. "Evaluation of methods for the prediction of membrane spanning regions." Bioinformatics 17.7 (2001): 646-653.</p>
+<p>3.Smith MR, Khera E, Wen F. “Engineering Novel and Improved Biocatalysts by Cell Surface Display.” Ind Eng Chem Res, volume 53, issue 16, 29 April 2015, pp. 4021-4032.</p>
+<p>4.Tanaka T, Yamada R, Ogino C, Kondo A. “Recent Developments in Yeast Cell Surface Display toward Extended Applications in Biotechnology.” Appl Microbiol Biotechnol, volume 75, issue 3, August 2012, pp. 577-591.</p>
+<p>5.Andreu C, Del Olmo ML. “Yeast Arming Systems: pros and cons of different protein anchors and other elements required for display.” Appl Microbiol Biotechnol, volume 102, issue 6, Mar 2018, pp. 2543-2561.
+</p>
 <!-- Add more about the biology of this part here