Difference between revisions of "Part:BBa K3995002"
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This operator region has a leftward-facing repressible promoter and a rightward-facing activated promoter. AtzR remains bound to the DNA. In the natural system, the left-facing promoter is upstream of the atzR CDS, and atzR is autoregulatory; in the presence of cyanuric acid, the binding of AtzR changes to cause the right-facing promoter to become activated, allowing for the expression of the downstream atzDEF CDS. The presence of cyanuric acid "frees" AtzR from being bound to the atzDEF promoter so polymerase can now bind and transcribe following gene. AtzR remains bound to the atzR promoter region even in the presence of cyanuric acid. Note that high glnK concentrations are also needed, as glnK is a co-activator of downstream operator. | This operator region has a leftward-facing repressible promoter and a rightward-facing activated promoter. AtzR remains bound to the DNA. In the natural system, the left-facing promoter is upstream of the atzR CDS, and atzR is autoregulatory; in the presence of cyanuric acid, the binding of AtzR changes to cause the right-facing promoter to become activated, allowing for the expression of the downstream atzDEF CDS. The presence of cyanuric acid "frees" AtzR from being bound to the atzDEF promoter so polymerase can now bind and transcribe following gene. AtzR remains bound to the atzR promoter region even in the presence of cyanuric acid. Note that high glnK concentrations are also needed, as glnK is a co-activator of downstream operator. | ||
=== Construct design === | === Construct design === | ||
| − | In our group, amilGFP is a key functional factor that show the signs of fluorescence which is controlled by a Pprovoin5 promoter (Figure | + | In our group, amilGFP is a key functional factor that show the signs of fluorescence which is controlled by a Pprovoin5 promoter (Figure 1). The Pprovoin5_amilGFP is inserted in the pUC57 mini vector (Figure 2). |
[[File:T--ECNUAS--BBa K3995004-Figure2.png|500px|thumb|center|Figure1. Pprovoin5_amilGFP box..]] | [[File:T--ECNUAS--BBa K3995004-Figure2.png|500px|thumb|center|Figure1. Pprovoin5_amilGFP box..]] | ||
[[File:T--ECNUAS--BBa K3995004-Figure3.png|500px|thumb|center|Figure2. Schematic maps of Pprovoin5_amilGFP (reporter plasmid)..]] | [[File:T--ECNUAS--BBa K3995004-Figure3.png|500px|thumb|center|Figure2. Schematic maps of Pprovoin5_amilGFP (reporter plasmid)..]] | ||
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===Experimental approach === | ===Experimental approach === | ||
Construction of recombinant plasmid | Construction of recombinant plasmid | ||
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[[File:T--ECNUAS--BBa K3995005-Figure5.png|500px|thumb|center|Figure 4. Histogram of the fluorescence intensity when the concentration of CYA equals to 30uM and the duration is 4 hours.]] | [[File:T--ECNUAS--BBa K3995005-Figure5.png|500px|thumb|center|Figure 4. Histogram of the fluorescence intensity when the concentration of CYA equals to 30uM and the duration is 4 hours.]] | ||
As seen from figure 4, comparing to the blank control, bacteria C presents an obvious higher fluorescence reaction to the cyanuric acid, the derivative from Atrazine. In such a case, it could indicate that our engineered bacteria could work for detecting cyanuric acid. | As seen from figure 4, comparing to the blank control, bacteria C presents an obvious higher fluorescence reaction to the cyanuric acid, the derivative from Atrazine. In such a case, it could indicate that our engineered bacteria could work for detecting cyanuric acid. | ||
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
Latest revision as of 12:36, 20 October 2021
Pprovoin5
Pprovoin5
BBa_K3995002
Name: Pprovoin5
Base Pairs: 82bp
Origin: Pseudomonas sp.,genome
Properties: atzDEF/atzR operator
Usage and Biology
This operator region has a leftward-facing repressible promoter and a rightward-facing activated promoter. AtzR remains bound to the DNA. In the natural system, the left-facing promoter is upstream of the atzR CDS, and atzR is autoregulatory; in the presence of cyanuric acid, the binding of AtzR changes to cause the right-facing promoter to become activated, allowing for the expression of the downstream atzDEF CDS. The presence of cyanuric acid "frees" AtzR from being bound to the atzDEF promoter so polymerase can now bind and transcribe following gene. AtzR remains bound to the atzR promoter region even in the presence of cyanuric acid. Note that high glnK concentrations are also needed, as glnK is a co-activator of downstream operator.
Construct design
In our group, amilGFP is a key functional factor that show the signs of fluorescence which is controlled by a Pprovoin5 promoter (Figure 1). The Pprovoin5_amilGFP is inserted in the pUC57 mini vector (Figure 2).
Experimental approach
Construction of recombinant plasmid The plasmid pUC57_mini and gene aiilGFP were digested by enzyme and these two fragments were connected by T4 DNA. Finally we got the recombinant plasmid pUC57-amilGFP.
Lane pUC57 -Pprovoin5-GFP-1 to 3: Bacteria PCR of monoclonals of amilGFP with size of 703bp. 1 to 3 were positive monoclonals. Extract 1 to 3 plasmids for sequencing.
Proof of function
As seen from figure 4, comparing to the blank control, bacteria C presents an obvious higher fluorescence reaction to the cyanuric acid, the derivative from Atrazine. In such a case, it could indicate that our engineered bacteria could work for detecting cyanuric acid.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]