Difference between revisions of "Part:BBa K3726017:Design"

 
 
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===Design Notes===
 
===Design Notes===
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In the upstream region the bases taatc corresponds with 5bp a spacer sequence to improve ribosomal translation, while AATG overhang creates an start codon that forces translation initiation of the downstream coding sequence.
  
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In the downstream region, the extra “aa”  bases allow the creation of an additional stop codon (TAA) at the end of the upstream coding sequence, ending the translation of the desired CDS in accordance with the Marburg Collection design guidelines.
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This polycistronic CDS sequence has been assembled following a modified procedure for golden gate domestication. To know more about the design process of this polycistronic lv.0 parts, visit the iGEM MADRID_UCM 2021 wiki page
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https://2021.igem.org/Team:MADRID_UCM/Design .
  
 
===Source===
 
===Source===
  
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.
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Firstly we made two PCR domestication with specific primers and CDS_LV0_BOH_3 ("BBa_K3726011") as template obtaining as products two sequences that afterwards were linked with Golden Gate. That sequences were able to be attached by golden gate because they had few complementary nucleotide as overhangs.  
  
 
===References===
 
===References===
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 +
D. Meng, J. Wang and C. You, "The properties of the linker in a mini-scaffoldin influence the catalytic efficiency of scaffoldin-mediated enzyme complexes", 2021.
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L. Albertsen et al., "Diversion of Flux toward Sesquiterpene Production in Saccharomyces cerevisiae by Fusion of Host and Heterologous Enzymes", 2021.

Latest revision as of 20:56, 19 October 2021


CDS_Lv0_BOH1_C_GSG


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 1246
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 252
    Illegal NheI site found at 480
    Illegal PstI site found at 1246
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1575
    Illegal BglII site found at 1692
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 1246
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 1246
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

In the upstream region the bases taatc corresponds with 5bp a spacer sequence to improve ribosomal translation, while AATG overhang creates an start codon that forces translation initiation of the downstream coding sequence.

In the downstream region, the extra “aa” bases allow the creation of an additional stop codon (TAA) at the end of the upstream coding sequence, ending the translation of the desired CDS in accordance with the Marburg Collection design guidelines.

This polycistronic CDS sequence has been assembled following a modified procedure for golden gate domestication. To know more about the design process of this polycistronic lv.0 parts, visit the iGEM MADRID_UCM 2021 wiki page https://2021.igem.org/Team:MADRID_UCM/Design .

Source

Firstly we made two PCR domestication with specific primers and CDS_LV0_BOH_3 ("BBa_K3726011") as template obtaining as products two sequences that afterwards were linked with Golden Gate. That sequences were able to be attached by golden gate because they had few complementary nucleotide as overhangs.

References

D. Meng, J. Wang and C. You, "The properties of the linker in a mini-scaffoldin influence the catalytic efficiency of scaffoldin-mediated enzyme complexes", 2021.

L. Albertsen et al., "Diversion of Flux toward Sesquiterpene Production in Saccharomyces cerevisiae by Fusion of Host and Heterologous Enzymes", 2021.