Difference between revisions of "Part:BBa K3733004"
Heping Zhang (Talk | contribs) |
HanZhenhao (Talk | contribs) (→Functional Parameters) |
||
| (18 intermediate revisions by 2 users not shown) | |||
| Line 5: | Line 5: | ||
<p> | <p> | ||
| − | + | P<sub>phsA151-342</sub> is a promoter under the control of the two-component system ThsSR, and it is improved from the P<sub>phsA</sub>(https://parts.igem.org/Part:BBa_K2507018) promoter. This promoter can be activated when the ThsSR two-component system senses high concentrations of thiosulfate. | |
</p> | </p> | ||
===Usage and Biology=== | ===Usage and Biology=== | ||
<p> | <p> | ||
| − | + | P<sub>phsA</sub> is a promoter controlled by a two-component system consisting of ThsS(BBa_K2507000) and ThsR(BBa_K2507001). When ThsS feels thiosulfate, ThsR is phosphorylated, and phosphorylated ThsR can activate P<sub>phsA</sub>. And P<sub>phsA151-342</sub> is a truncated promoter that retains P<sub>phsA</sub> nucleotides 151-342 (<b>Figure 1</b>). Deleting the first 150 bp of the 342 bp P<sub>phsA</sub> nucleotide sequence has no effect on the promoter activation induced by thiosulfate, and it has a slight increase in the expression level of downstream gene. | |
</p> | </p> | ||
<html> | <html> | ||
| Line 18: | Line 18: | ||
</head> | </head> | ||
<body> | <body> | ||
| − | <img src="https://2021.igem.org/wiki/images/2/24/T--HZAU-China--PphsA151-342-1.png" style="width: | + | <center><img src="https://2021.igem.org/wiki/images/2/24/T--HZAU-China--PphsA151-342-1.png" style="width:793px;height:360px"></center> |
| − | <center><b>Figure 1.</b> The nucleotide sequence of | + | <center><b>Figure 1.</b> The nucleotide sequence of P<sub>phsA151-342</sub> (the gray part is the deleted sequence of P<sub>phsA</sub>)</center> |
<br> | <br> | ||
</body> | </body> | ||
</html> | </html> | ||
| − | |||
===Functional Parameters=== | ===Functional Parameters=== | ||
<p> | <p> | ||
| − | To characterize this part, | + | To characterize this part, P<sub>phsA</sub> and PphsA151-342 were cloned into pSC101 vector separately. And they are all under the control of the two-component system ThsSR. We chose neGFP(https://parts.igem.org/Part:BBa_K3733012) as the reporter. Plasmids were transferred into <i>E. coli</i> DH5α. The strain was expanded in LB medium to OD=0.4, then 198μL of bacterial solution was spotted into a 96-well plate, and a series of concentration gradients (0mM, 0.001mM, 0.01mM, 0.1mM, 1mM, 10mM) of thiosulfate were added Sodium sulfate solution. Add 2μL of sodium thiosulfate to each well for induction and measure the fluorescence and OD600 in the Synergy H1 microplate reader overnight. In the experiment, the effect of the truncated promoter P<sub>phsA151-342</sub> induced by thiosulfate does not change significantly compared with P<sub>phsA</sub>, which means that the deletion of the first 150 bp nucleotide of P<sub>phsA</sub> has no effects on the activity of the promoter. According to the description of Daeffler KN et al., the strength of the promoter after truncation will not increase significantly [1]. However, according to the results of our repeated experiments, the truncated promoter still slightly enhances the expression of downstream gene to a certain extent (<b>Figure 2</b>). |
<html> | <html> | ||
<head> | <head> | ||
| Line 34: | Line 33: | ||
</head> | </head> | ||
<body> | <body> | ||
| − | <img src="https://static.igem.org/mediawiki/parts/5/ | + | <center><img src="https://static.igem.org/mediawiki/parts/5/50/T--HZAU-China--PphsA151-342-2.png" style="width:784px;height:600px"></center> |
| − | <center><b>Figure 2.</b>Comparison of | + | <center><b>Figure 2.</b>Comparison of P<sub>phsA</sub> and P<sub>phsA151-342</sub> induced by different concentrations of sodium thiosulfate</center> |
<br> | <br> | ||
</body> | </body> | ||
| Line 46: | Line 45: | ||
<body> | <body> | ||
<table><tr> | <table><tr> | ||
| − | <td><img src="https://static.igem.org/mediawiki/parts/ | + | <td><img src="https://static.igem.org/mediawiki/parts/3/32/T--HZAU-China--PphsA151-342-3L.png" style="width:431.8px;height:300px" border=0></td> |
| − | <td><img src="https://static.igem.org/mediawiki/parts/5/ | + | <td><img src="https://static.igem.org/mediawiki/parts/5/5f/T--HZAU-China--PphsA151-342-3R.png" style="width:431.8px;height:300px" border=0></td> |
</tr></table> | </tr></table> | ||
| − | <center><b>Figure 3.</b>The activation of | + | <center><b>Figure 3.</b>The activation of P<sub>phsA</sub>(left) and P<sub>phsA151-342</sub>(right) under different induced concentrations of sodium thiosulfate</center> |
<br> | <br> | ||
</body> | </body> | ||
| Line 59: | Line 58: | ||
===Reference=== | ===Reference=== | ||
| − | + | ||
| + | |||
[1] Daeffler KN, Galley JD, Sheth RU, et al. Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation[J]. Molecular systems biology, 2017, 13(4): 923. | [1] Daeffler KN, Galley JD, Sheth RU, et al. Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation[J]. Molecular systems biology, 2017, 13(4): 923. | ||
| − | + | ||
<!-- Uncomment this to enable Functional Parameter display | <!-- Uncomment this to enable Functional Parameter display | ||
===Functional Parameters=== | ===Functional Parameters=== | ||
<partinfo>BBa_K3733004 parameters</partinfo> | <partinfo>BBa_K3733004 parameters</partinfo> | ||
<!-- --> | <!-- --> | ||
Latest revision as of 13:21, 19 October 2021
PphsA151-342
PphsA151-342 is a promoter under the control of the two-component system ThsSR, and it is improved from the PphsA(https://parts.igem.org/Part:BBa_K2507018) promoter. This promoter can be activated when the ThsSR two-component system senses high concentrations of thiosulfate.
Usage and Biology
PphsA is a promoter controlled by a two-component system consisting of ThsS(BBa_K2507000) and ThsR(BBa_K2507001). When ThsS feels thiosulfate, ThsR is phosphorylated, and phosphorylated ThsR can activate PphsA. And PphsA151-342 is a truncated promoter that retains PphsA nucleotides 151-342 (Figure 1). Deleting the first 150 bp of the 342 bp PphsA nucleotide sequence has no effect on the promoter activation induced by thiosulfate, and it has a slight increase in the expression level of downstream gene.
Functional Parameters
To characterize this part, PphsA and PphsA151-342 were cloned into pSC101 vector separately. And they are all under the control of the two-component system ThsSR. We chose neGFP(https://parts.igem.org/Part:BBa_K3733012) as the reporter. Plasmids were transferred into E. coli DH5α. The strain was expanded in LB medium to OD=0.4, then 198μL of bacterial solution was spotted into a 96-well plate, and a series of concentration gradients (0mM, 0.001mM, 0.01mM, 0.1mM, 1mM, 10mM) of thiosulfate were added Sodium sulfate solution. Add 2μL of sodium thiosulfate to each well for induction and measure the fluorescence and OD600 in the Synergy H1 microplate reader overnight. In the experiment, the effect of the truncated promoter PphsA151-342 induced by thiosulfate does not change significantly compared with PphsA, which means that the deletion of the first 150 bp nucleotide of PphsA has no effects on the activity of the promoter. According to the description of Daeffler KN et al., the strength of the promoter after truncation will not increase significantly [1]. However, according to the results of our repeated experiments, the truncated promoter still slightly enhances the expression of downstream gene to a certain extent (Figure 2).
 |
 |
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Reference
[1] Daeffler KN, Galley JD, Sheth RU, et al. Engineering bacterial thiosulfate and tetrathionate sensors for detecting gut inflammation[J]. Molecular systems biology, 2017, 13(4): 923.