Difference between revisions of "Part:BBa K3718003"

 
 
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<partinfo>BBa_K3718003 short</partinfo>
 
<partinfo>BBa_K3718003 short</partinfo>
  
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Single guide RNA targeting arcA, for knock-out
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Single guide RNA targeting <I>arcA</I>, for knock-out
 
<h1>crRNA</h1>
 
<h1>crRNA</h1>
  
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Through the results returned by CHOPCHOP, our team selected the crRNA at rank no.2, which is positioned at about one-fifth into the arcA gene. The arcA protein is expected to be dysfunctioned. The CG content is 40% and its efficiency is predicted at 70.41%.
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Through the results returned by CHOPCHOP, our team selected the crRNA at rank no.2, which is positioned at about one-fifth into the <I>arcA</I> gene. The <I>arcA</I> protein is expected to be dysfunctioned. The CG content is 40% and its efficiency is predicted at 70.41%.
  
 
<h1>tracrRNA and T7 terminator</h1>
 
<h1>tracrRNA and T7 terminator</h1>

Latest revision as of 15:34, 18 October 2021


sgRNA for arcA with terminator - transcription template

Single guide RNA targeting arcA, for knock-out

crRNA

Through the results returned by CHOPCHOP, our team selected the crRNA at rank no.2, which is positioned at about one-fifth into the arcA gene. The arcA protein is expected to be dysfunctioned. The CG content is 40% and its efficiency is predicted at 70.41%.

tracrRNA and T7 terminator

The design of tracrRNA and T7 terminator is referenced from the 2017 IGEM team iGEM17_BGIC-Union, part BBa_K2371006.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal prefix found in sequence at 1
    Illegal suffix found in sequence at 171
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 1
    Illegal SpeI site found at 172
    Illegal PstI site found at 186
    Illegal NotI site found at 7
    Illegal NotI site found at 179
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 1
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal prefix found in sequence at 1
    Illegal suffix found in sequence at 172
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal prefix found in sequence at 1
    Illegal XbaI site found at 16
    Illegal SpeI site found at 172
    Illegal PstI site found at 186
  • 1000
    COMPATIBLE WITH RFC[1000]