Difference between revisions of "Part:BBa K3930022"
 
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<h2>Introduction</h2>
 
<h2>Introduction</h2>
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<p>The sequence of the integrative locus down XII-4 of <i>S. cerevisiae</i> genome comes from the EasyClone-MarkerFree kit (Jessop-Fabre et al.,2016).
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<p>The sequences to target the locus XII-4 (Chr XII:830227..831248) of <i>S. cerevisiae</i> genome come from the EasyClone-MarkerFree kit (Jessop-Fabre et al., 2016).
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This part is flanking the insert in 3', and must be used with the integrative locus (BBa_K3930021) XII-4 up part in 5'.</p>
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This part is flanking the insert in 3' and must be used with the <a href="https://parts.igem.org/Part:BBa_K3930021" class="pr-0" target="_blank">(BBa_K3930021)</a> XII-4 up part in 5'.</p>
 
<h2>Results</h2>
 
<h2>Results</h2>
  
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<h3>Integration of part (BBa_K3930003) into the yeast genome</h3>
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<h3>Integration of part <a href="https://parts.igem.org/Part:BBa_K3930003" class="pr-0" target="_blank">(BBa_K3930003)</a> into the yeast genome at locus XII-4</h3>
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<p> The part (BBa_K3930003) was linearized and transformed into the <i>S.cerevisiae</i> LycoYeast strain according to the Takara yeast transformation protocol, with 5 µg of DNA. The insert is flanked by parts (BBa_K3930021) and (BBa_K3930022). Figure 1 shows the electrophoresis gel of colony PCR to verify integrants genotype.</p>
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<p> The part <a href="https://parts.igem.org/Part:BBa_K3930003" class="pr-0" target="_blank">(BBa_K3930003)</a> was linearized and transformed into the <i>S. cerevisiae</i> LycoYeast strain according to the Takara yeast transformation protocol, with 5 µg of DNA. The insert is flanked by parts <a href="https://parts.igem.org/Part:BBa_K3930021" class="pr-0" target="_blank">(BBa_K3930021)</a> and (BBa_K3930022). Figure 1 shows the electrophoresis gel of colony PCR to verify integrants genotype (clone 2 is OK).</p>
 
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                     <a href="https://2021.igem.org/wiki/images/a/a9/T--Toulouse_INSA-UPS--2021_fig23.violette.png" class="internal" title="Enlarge"></a>
 
                     <a href="https://2021.igem.org/wiki/images/a/a9/T--Toulouse_INSA-UPS--2021_fig23.violette.png" class="internal" title="Enlarge"></a>
 
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                 </div>
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                 <b>Figure 1: </b> <b> Integration of pVIOLETTE insert in the LycoYeast genome</b>
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                 <b>Figure 1: </b> <b> Integration of pVIOLETTE insert in the LycoYeast genome at locus XII-4</b>
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                 <p>pVIOLETTE insert integration was checked by PCR visualised on EtBr stained agarose electrophoresis gel. A theoretical gel is presented on the right and the NEB 1 kb DNA ladder on the left (note that a different ladder is presented on the theoretical gel)</p>
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                 <p>pVIOLETTE insert integration at locus XII-4 was checked by PCR and the result was visualized on EtBr stained agarose electrophoresis gel. A theoretical gel is presented on the right (note that a different ladder is presented on the theoretical gel).</p>
 
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<p><b>The integrative locus XII-4 down (BBa_K3930022) coupled with the integrative locus (BBa_K3930021) XII-4 up part are functional under these experimental conditions.</b><p>
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<p><b>The sequence XII-4 down (BBa_K3930022) coupled with the XII-4 up part <a href="https://parts.igem.org/Part:BBa_K3930021" class="pr-0" target="_blank">(BBa_K3930021)</a> is functional to target integration at the XII-4 locus under these experimental conditions.</b><p>
 
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<h2>References</h2>
 
<h2>References</h2>

Latest revision as of 21:19, 16 October 2021


Down Integrative sequence to target locus XII-4 of Saccharomyces cerevisiae genome Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Introduction

The sequences to target the locus XII-4 (Chr XII:830227..831248) of S. cerevisiae genome come from the EasyClone-MarkerFree kit (Jessop-Fabre et al., 2016). This part is flanking the insert in 3' and must be used with the (BBa_K3930021) XII-4 up part in 5'.

Results

Integration of part (BBa_K3930003) into the yeast genome at locus XII-4

The part (BBa_K3930003) was linearized and transformed into the S. cerevisiae LycoYeast strain according to the Takara yeast transformation protocol, with 5 µg of DNA. The insert is flanked by parts (BBa_K3930021) and (BBa_K3930022). Figure 1 shows the electrophoresis gel of colony PCR to verify integrants genotype (clone 2 is OK).



Figure 1: Integration of pVIOLETTE insert in the LycoYeast genome at locus XII-4

pVIOLETTE insert integration at locus XII-4 was checked by PCR and the result was visualized on EtBr stained agarose electrophoresis gel. A theoretical gel is presented on the right (note that a different ladder is presented on the theoretical gel).


The sequence XII-4 down (BBa_K3930022) coupled with the XII-4 up part (BBa_K3930021) is functional to target integration at the XII-4 locus under these experimental conditions.


References

  1. Chen X, Shukal S, Zhang C. 2019. Integrating Enzyme and Metabolic Engineering Tools for Enhanced α-Ionone Production. J Agric Food Chem. 67(49):13451–13459. doi:10.1021/acs.jafc.9b00860.
    2.