Difference between revisions of "Part:BBa K3866030"

(→‎Usage and Biology)
(→‎Design Notes)
 
(3 intermediate revisions by the same user not shown)
Line 6: Line 6:
  
 
This composite part consists of the following Transcription Units:
 
This composite part consists of the following Transcription Units:
−
<p><i>ygfG</i> <bbpart>BBa_K3866006</bbpart> and <i>ygfH</i> <bbpart>BBa_K3866019</bbpart>
+
<p><i>ygfG</i>: <bbpart>BBa_K3866006</bbpart> & <i>ygfH</i>: <bbpart>BBa_K3866019</bbpart>
  
 
===Design Notes===
 
===Design Notes===
 
The coding sequences were domesticated. We removed BsmBI and BsaI sites in order to be compatible with GoldenBraid and MoClo. The sequences are cloned in seva ω2 vector and have overhangs compatible for GoldenBraid cloning.
 
The coding sequences were domesticated. We removed BsmBI and BsaI sites in order to be compatible with GoldenBraid and MoClo. The sequences are cloned in seva ω2 vector and have overhangs compatible for GoldenBraid cloning.
  
−
[[Image:T--Thessaly--YGH-term.png|800px|thumb|none|<I><b>Figure 1.</b> The ω module of the Propionate Production: ω2:ParaBAD:RBS-ygfG-Double terminator:ParaBAD:RBS-ygfH-Double terminator </i>]]
+
[[Image:T--Thessaly--YGH-term.png|600px|thumb|none|<I><b>Figure 1.</b> The ω module of the Propionate Production: ω2:ParaBAD:RBS-ygfG-Double terminator:ParaBAD:RBS-ygfH-Double terminator </i>]]
  
 
===Verification of Cloning===
 
===Verification of Cloning===
−
[[File:T--Thessaly--YGHgel.png|800px|thumb|none|<i><b>Figure 2.</b>: (C=Cut, U=Uncut) Restriction digestion of ω1-sbm-stuffer (C6-C7-C8) with: EcoRI + EcoRV, Expected bands: 7439bp, 1509bp, 1132bp, 302bp Positive result: C6-C7-C8</i>]]
+
[[File:T--Thessaly--YGHgel.png|800px|thumb|none|<i><b>Figure 2.</b>: (C=Cut, U=Uncut) Restriction digestion of ω2-ygfG-ygfH (C4-C5-C6-C7-C8) with: EcoRI + EcoRV, Expected bands: 6674bp, 2571bp, 2167bp, 309bp Positive result: C7</i>]]
  
 
===Experimental Use and Experience===
 
===Experimental Use and Experience===

Latest revision as of 23:32, 25 September 2021


ParaBAD:ygfG:Terminator - ParaBAD:ygfH:Terminator

Usage and Biology

This composite part consists of the following Transcription Units:

ygfG: BBa_K3866006 & ygfH: BBa_K3866019

Design Notes

The coding sequences were domesticated. We removed BsmBI and BsaI sites in order to be compatible with GoldenBraid and MoClo. The sequences are cloned in seva ω2 vector and have overhangs compatible for GoldenBraid cloning.

Figure 1. The ω module of the Propionate Production: ω2:ParaBAD:RBS-ygfG-Double terminator:ParaBAD:RBS-ygfH-Double terminator

Verification of Cloning

Figure 2.: (C=Cut, U=Uncut) Restriction digestion of ω2-ygfG-ygfH (C4-C5-C6-C7-C8) with: EcoRI + EcoRV, Expected bands: 6674bp, 2571bp, 2167bp, 309bp Positive result: C7

Experimental Use and Experience

This part showed functionality at part BBa_K3866031

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 4655
    Illegal BamHI site found at 1148
    Illegal BamHI site found at 1424
    Illegal BamHI site found at 3343
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 983
    Illegal AgeI site found at 3178
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI site found at 965
    Illegal SapI site found at 3160
    Illegal SapI.rc site found at 1883


References

Akawi L, Srirangan K, Liu X, Moo-Young M, Perry Chou C. Engineering Escherichia coli for high-level production of propionate. J Ind Microbiol Biotechnol. 2015 Jul;42(7):1057-72. https://doi.org/10.1007/s10295-015-1627-4