Difference between revisions of "Part:BBa K3332067"
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===Biology===
 
===Biology===
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Phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. ''Sinorhizobium meliloti'' 1021 use PhnE1 and PhnE2 to construct the permease protein of ABC transporter, which includes PhnE1, PhnE2, PhnC and PhnD proteins, this transporter can transport glyphosate to cytoplasm. The phnEE gene encodes permease protein which can transport glyphosate to cytoplasm.
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Phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. ''Sinorhizobium meliloti'' 1021 use PhnE1 and PhnE2 to construct the permease protein of ABC transporter, which includes PhnE1, PhnE2, PhnC and PhnD proteins, this transporter can transport glyphosate to cytoplasm. The ''phnEE'' gene encodes permease protein which can transport glyphosate to cytoplasm.
 
===Usage===
 
===Usage===
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We ligased the strong promoter and RBS（BBa_J23100+BBa_B0034）and the parts (phnE1、phnE2) on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into ''E. coli'' DH5α & ''E. coli'' BL21(DE3), enabled the E. coli to transport glyphosate to cytoplasm.
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We ligased the strong promoter and RBS（BBa_J23100+BBa_B0034）and the parts (phnE1、phnE2) on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into ''E. coli'' DH5α & ''E. coli'' BL21(DE3), which enabled the ''E. coli'' to transport glyphosate to cytoplasm.
 
===Characterization===
 
===Characterization===
 
1. Agarose Gel Electrophoresis：
 
1. Agarose Gel Electrophoresis：
 
After receiving the synthesized DNA, restriction digestion was done to certify that the plasmid was correct, and the experimental results were shown in figure 1.
 
After receiving the synthesized DNA, restriction digestion was done to certify that the plasmid was correct, and the experimental results were shown in figure 1.
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<table><tr><th>[[File:T--XMU-China2020--BBa K3332067 1.png|thumb|700px|Fig.1 The result of plasmid cut with enzyme ''EcoR''I and ''Pst''I. Plasmid: pSB1C3]]</th><th></table>
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<table><tr><th>[[File:T--XMU-China2020--BBa K3332067 1.png|thumb|700px|Fig.1 The result of plasmid cut with enzyme ''Eco''R I and ''Pst'' I. Plasmid: pSB1C3]]</th><th></table>
 
2. SDS-PAGE:
 
2. SDS-PAGE:
 
The constructed plasmid was transformed into ''E. coli'' BL21 (DE3). Both of them were electrophoresed on a sodium dodecyl sulfate (SDS)-12% (wt/vol) polyacrylamide gel, followed by silver staining.
 
The constructed plasmid was transformed into ''E. coli'' BL21 (DE3). Both of them were electrophoresed on a sodium dodecyl sulfate (SDS)-12% (wt/vol) polyacrylamide gel, followed by silver staining.
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<table><tr><th>[[File:T--XMU-China2020--BBa K3332067 7.png|thumb|500px|Fig.3 Relationship between elution peak area of glyphosate and culture time.]]</th><th></table>
 
<table><tr><th>[[File:T--XMU-China2020--BBa K3332067 7.png|thumb|500px|Fig.3 Relationship between elution peak area of glyphosate and culture time.]]</th><th></table>
  
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===Sequence and Features===
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K3332067 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3332067 SequenceAndFeatures</partinfo>
  

Revision as of 02:22, 28 October 2020


J23100-RBS-phnE1-RBS-phnE2

A composite part that can enrich glyphosate in cytoplasm.To construct a new part that can transport glyphosate to cytoplasm

Biology

Phn system is a gene cluster for organophosphorus transport and degradation in many microorganisms. Sinorhizobium meliloti 1021 use PhnE1 and PhnE2 to construct the permease protein of ABC transporter, which includes PhnE1, PhnE2, PhnC and PhnD proteins, this transporter can transport glyphosate to cytoplasm. The phnEE gene encodes permease protein which can transport glyphosate to cytoplasm.

Usage

We ligased the strong promoter and RBS（BBa_J23100+BBa_B0034）and the parts (phnE1、phnE2) on the expression vector pSB1C3 by standard assembly. Then the ligation mixture was transformed into E. coli DH5α & E. coli BL21(DE3), which enabled the E. coli to transport glyphosate to cytoplasm.

Characterization

1. Agarose Gel Electrophoresis： After receiving the synthesized DNA, restriction digestion was done to certify that the plasmid was correct, and the experimental results were shown in figure 1.

Fig.1 The result of plasmid cut with enzyme EcoR I and Pst I. Plasmid: pSB1C3

2. SDS-PAGE: The constructed plasmid was transformed into E. coli BL21 (DE3). Both of them were electrophoresed on a sodium dodecyl sulfate (SDS)-12% (wt/vol) polyacrylamide gel, followed by silver staining.

Fig.2 SDS-PAGE analysis of protein in lysate of E. coli BL21 (DE3) cells. Target bands can be seen at about 36.1 kDa and 55.4kDa.

3. HPLC: Verify that phnEE enhances the transport of glyphosate by the chassis bacteria by HPLC. The result is shown in Fig.3, phnEE enhance the transport of glyphosate by the chassis bacteria compared to the blank control obviously.

Fig.3 Relationship between elution peak area of glyphosate and culture time.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
    Illegal NheI site found at 1057
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 2209
  • 1000
    COMPATIBLE WITH RFC[1000]