Difference between revisions of "Part:BBa K3610005"

 
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__NOTOC__
 
__NOTOC__
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{|width='80%'
 
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|width=35% valign='top'|
 
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[[Image:Terminator.png]]
 
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<partinfo>BBa_K3610005 parameters</partinfo>
 
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<partinfo>BBa_K3610005 short</partinfo>
 
<partinfo>BBa_K3610005 short</partinfo>
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* This part is the ScENO2 terminator of S. cerevisiae
 
  
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This part entails the sequence of the plant PRR EFR from A. thaliana.
  
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'''Secondary Structure'''
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===Usage and Biology===
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Elongation factor-thermo unstable receptor (EFR) from A. thaliana is a plant pattern-recognition receptor (PRR). It is a cell surface receptor and part of the plants firts defence mechanism against potential pathogens.
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The EFR receptor is also a leucin-rich-repeats (LRR) receptor-like serine/threonine-protein kinase. The protein consists of an extracellular domain with leucin-rich repeats, a ligand binding domain found in many receptors, a single-pass transmembrane domain and finally an intracellular kinase domain.
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The ligand binding domain from EFR has high specificity to a bacterial pathogen-associated moleculat pattern (PAMP), namely the epitope elf18 of the abundant protein Elongation Factor Tu (EF-Tu), which is catalyzes the binding of aminoacyl-tRNA (aa-tRNA) to the ribosome in most prokaryotes and therefore is evolutionarily highly conserved. This makes the EFR a receptor that can be activated by the presence of a huge variety of bacteria.
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Upon binding of the ligand to the extracellular domain, the receptor dimerizes with its coreceptor BRI1-associated receptor kinase (BAK1). This interaction triggers the activation of the intracellular kinase domain of EFR and BAK1, initiating a signal cascade leading to an upregulation of immune response mechanisms.
  
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[[Image:Mfold-K3610002-1.png]]
 
  
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<hr>
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'''Measurement'''
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<!-- -->
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* [http://openwetware.org/wiki/Cconboy:Terminator_Characterization/Results How these parts were measured]
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<span class='h3bb'>Sequence and Features</span>
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<partinfo>BBa_K3610005 SequenceAndFeatures</partinfo>

Latest revision as of 20:20, 27 October 2020


EFR from A. thaliana

This part entails the sequence of the plant PRR EFR from A. thaliana.

Usage and Biology

Elongation factor-thermo unstable receptor (EFR) from A. thaliana is a plant pattern-recognition receptor (PRR). It is a cell surface receptor and part of the plants firts defence mechanism against potential pathogens. The EFR receptor is also a leucin-rich-repeats (LRR) receptor-like serine/threonine-protein kinase. The protein consists of an extracellular domain with leucin-rich repeats, a ligand binding domain found in many receptors, a single-pass transmembrane domain and finally an intracellular kinase domain. The ligand binding domain from EFR has high specificity to a bacterial pathogen-associated moleculat pattern (PAMP), namely the epitope elf18 of the abundant protein Elongation Factor Tu (EF-Tu), which is catalyzes the binding of aminoacyl-tRNA (aa-tRNA) to the ribosome in most prokaryotes and therefore is evolutionarily highly conserved. This makes the EFR a receptor that can be activated by the presence of a huge variety of bacteria. Upon binding of the ligand to the extracellular domain, the receptor dimerizes with its coreceptor BRI1-associated receptor kinase (BAK1). This interaction triggers the activation of the intracellular kinase domain of EFR and BAK1, initiating a signal cascade leading to an upregulation of immune response mechanisms.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 2753
    Illegal XbaI site found at 433
    Illegal XbaI site found at 2568
    Illegal SpeI site found at 1114
    Illegal PstI site found at 2407
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 2753
    Illegal SpeI site found at 1114
    Illegal PstI site found at 2407
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 2753
    Illegal BglII site found at 2418
    Illegal BglII site found at 2446
    Illegal BglII site found at 2989
    Illegal XhoI site found at 2442
    Illegal XhoI site found at 3032
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 2753
    Illegal XbaI site found at 433
    Illegal XbaI site found at 2568
    Illegal SpeI site found at 1114
    Illegal PstI site found at 2407
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 2753
    Illegal XbaI site found at 433
    Illegal XbaI site found at 2568
    Illegal SpeI site found at 1114
    Illegal PstI site found at 2407
    Illegal AgeI site found at 256
  • 1000
    COMPATIBLE WITH RFC[1000]