Difference between revisions of "Part:BBa K3600003"

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<partinfo>BBa_K3600003 short</partinfo>
 
<partinfo>BBa_K3600003 short</partinfo>
  
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This part contains the promoter of the gene GSH1 from S. Cerevisiae.
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GSH1 promoter part plasmid was made in order to create a part plasmid which contains the GSH1 promoter and is compatible with the Yeast Toolkit. To create a promoter part plasmid compatible with the yeast toolkit, at first, we designed a gBlock consisting of the 500bp promoter region, that was retrieved from the yeast genome database, and two linking sequences which were added to the ends of the promoter.These linking sequences contained a BsaI and a BsmBI cutting site each to make Golden Gate assembly possible.Then, the gBlock was inserted into the part plasmid entry vector (pYTK001) through a BsmBI assembly.
  
 
===Usage and Biology===
 
===Usage and Biology===
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* activator: Yap1p
 
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*GSH1 gene encodes gamma-glutamylcysteine synthetase.<html><a href="#Wu1994"><sup>1</sup></a></html>
 
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*The promoter GSH1 has been chosen in order to express fluorescent protein [ref] when the S.cervisiae is exposed to oxidative stress.
 
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<!--
 
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*The binding site for Yap1p, in the promoter GSH1, is TTACTAA.<html><a href="#Kuge1994"><sup>1</sup></a>
 
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The GSH1 gene encodes gamma-glutamylcysteine synthetase.<html><a href="#Wu1994"><sup>1</sup></a></html>
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The GSH1 promoter is regulated by the transcription factor Yap1p. The binding site for Yap1p, in the promoter GSH1, is TTACTAA.<html><a href="#Kuge1994"><sup>1</sup></a></html>. Using the yeast toolkit for modular assembly, the GSH1 promoter plasmid was used as a part of type II.
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<!---->
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>
 
<partinfo>BBa_K3600003 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3600003 SequenceAndFeatures</partinfo>
  
  
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<!-- Uncomment this to enable Functional Parameter display
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<--!
 
===Functional Parameters===
 
===Functional Parameters===
 
<partinfo>BBa_K3600003 parameters</partinfo>
 
<partinfo>BBa_K3600003 parameters</partinfo>
 
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===Measurements===
 
===Measurements===
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<HTML><a name=Wu1994 style="color:black">
 
<HTML><a name=Wu1994 style="color:black">
 
[1] Wu, A. L. & Moye-Rowley, W. S. GSH1, which encodes gamma-glutamylcysteine synthetase, is a target gene for yAP-1 transcriptional regulation. Molecular and Cellular Biology 14, 5832–5839 (1994).
 
[1] Wu, A. L. & Moye-Rowley, W. S. GSH1, which encodes gamma-glutamylcysteine synthetase, is a target gene for yAP-1 transcriptional regulation. Molecular and Cellular Biology 14, 5832–5839 (1994).
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</a></html>
 
</a></html>

Latest revision as of 19:21, 27 October 2020


GSH1 promoter part plasmid

GSH1 promoter part plasmid was made in order to create a part plasmid which contains the GSH1 promoter and is compatible with the Yeast Toolkit. To create a promoter part plasmid compatible with the yeast toolkit, at first, we designed a gBlock consisting of the 500bp promoter region, that was retrieved from the yeast genome database, and two linking sequences which were added to the ends of the promoter.These linking sequences contained a BsaI and a BsmBI cutting site each to make Golden Gate assembly possible.Then, the gBlock was inserted into the part plasmid entry vector (pYTK001) through a BsmBI assembly.

Usage and Biology

The GSH1 gene encodes gamma-glutamylcysteine synthetase.1 The GSH1 promoter is regulated by the transcription factor Yap1p. The binding site for Yap1p, in the promoter GSH1, is TTACTAA.1. Using the yeast toolkit for modular assembly, the GSH1 promoter plasmid was used as a part of type II.



Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 975
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 563
    Illegal BsaI site found at 972
    Illegal BsaI.rc site found at 1084


<--!

Functional Parameters


Measurements

References

[1] Wu, A. L. & Moye-Rowley, W. S. GSH1, which encodes gamma-glutamylcysteine synthetase, is a target gene for yAP-1 transcriptional regulation. Molecular and Cellular Biology 14, 5832–5839 (1994).