Difference between revisions of "Part:BBa K3407018:Design"
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<partinfo>BBa_K3407018 SequenceAndFeatures</partinfo> | <partinfo>BBa_K3407018 SequenceAndFeatures</partinfo> | ||
+ | ===Design notes=== | ||
+ | The biobrick is made with EcoRI and BglII before the RBS and CDS, and BamHI and XhoI after the CDS, so the piece CDS can be excised using these set of enzymes. | ||
− | === | + | ===Source=== |
− | + | ||
+ | Genomic DNA from <i>B. subtilis</i> strain 168. | ||
+ | Plasmid used pBbE8c backbone from BglBricks. pBbE8c-RFP was a gift from Jay Keasling (Addgene plasmid # 35269; http://n2t.net/addgene:35269; RRID:Addgene_35269) <html><a href="#1">[1]</a></html> | ||
+ | Please refer to the Addgene page for more information about licences associated with the use of the plasmid. | ||
+ | ===References=== | ||
+ | <html> | ||
− | + | <head> | |
− | + | <title>Ordered List</title> | |
− | === | + | </head> |
+ | |||
+ | <style> | ||
+ | |||
+ | ol li { | ||
+ | |||
+ | counter-increment: OrderedList; | ||
+ | |||
+ | list-style: none; | ||
+ | |||
+ | } | ||
+ | |||
+ | ol li :before { | ||
+ | |||
+ | content: "[" counter(OrderedList) "]"; | ||
+ | |||
+ | } | ||
+ | |||
+ | </style> | ||
+ | <html> | ||
+ | <ol> | ||
+ | |||
+ | <li> | ||
+ | <a id="1" href="https://jbioleng.biomedcentral.com/articles/10.1186/1754-1611-5-12" target="_blank"> | ||
+ | BglBrick vectors and datasheets: A synthetic biology platform for gene expression. Lee TS, Krupa RA, Zhang F, Hajimorad M, Holtz WJ, Prasad N, Lee SK, Keasling JD. J Biol Eng. 2011 Sep 20;5:12. 10.1186/1754-1611-5-12 PubMed 21933410</a> | ||
+ | </li> | ||
+ | </ol> | ||
+ | </html> |
Revision as of 11:19, 27 October 2020
Mini-3 endoribonuclease with araBAD promoter - RBS - and rrnBT1 terminator
Assembly Compatibility:
- 10INCOMPATIBLE WITH RFC[10]Illegal EcoRI site found at 300
Illegal XbaI site found at 673
Illegal PstI site found at 527 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 300
Illegal PstI site found at 527 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 300
Illegal BglII site found at 309
Illegal BamHI site found at 809
Illegal XhoI site found at 818 - 23INCOMPATIBLE WITH RFC[23]Illegal EcoRI site found at 300
Illegal XbaI site found at 673
Illegal PstI site found at 527 - 25INCOMPATIBLE WITH RFC[25]Illegal EcoRI site found at 300
Illegal XbaI site found at 673
Illegal PstI site found at 527
Illegal AgeI site found at 74 - 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI site found at 56
Design notes
The biobrick is made with EcoRI and BglII before the RBS and CDS, and BamHI and XhoI after the CDS, so the piece CDS can be excised using these set of enzymes.
Source
Genomic DNA from B. subtilis strain 168. Plasmid used pBbE8c backbone from BglBricks. pBbE8c-RFP was a gift from Jay Keasling (Addgene plasmid # 35269; http://n2t.net/addgene:35269; RRID:Addgene_35269) [1] Please refer to the Addgene page for more information about licences associated with the use of the plasmid.
References