Difference between revisions of "Part:BBa K3599003"

 
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<partinfo>BBa_K3599003 short</partinfo>
 
<partinfo>BBa_K3599003 short</partinfo>
  
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It's a Nitrilase, which has been shown to degrade cyanide, and we use it for our PAN degradation.
 
  
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===Overview===
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===Usage and Biology===
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Nitrilase coming from <i>Achromobacter denitrificans</i>, catalysis of the reaction: a nitrile + 2H<sub>2</sub>O = a carboxylate + NH<sub>3</sub>. The codon usage was optimized for expression in <i>Escherichia coli</i>.
  
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<span class='h3bb'>Sequence and Features</span>
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===Sequence and Features===
 
<partinfo>BBa_K3599003 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3599003 SequenceAndFeatures</partinfo>
  
  
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===Primitive Species Background===
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===Functional Parameters===
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The type species of gram negative, aerobic bacteria in the genus. A genus of strictly aerobic, non-spore forming rods. Soil and water are regarded as the natural habitat. They are sometimes isolated from a hospital environment and humans. Previously in the genus Alcaligenes, the classification and nomenclature of this species has been frequently emended. The two subspecies, <i>Achromobacter xylosoxidans subsp. denitrificans</i> and <i>Achromobacter xylosoxidans subsp. xylosoxidans</i> are associated with infections.
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<partinfo>BBa_K3599003 parameters</partinfo>
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===Design & Experience===
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In iGEM2020 TPR_China Project, the nhNIT was expressed using pTac system, which was pre-embedded into commercial expression vector pET-28b. The whole expression cassette can be found in [[Part:BBa_K3599009|BBa_K3599009]].
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===Reference===
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Novikov, A. D. , Riabchenko, L. E. , Leonova, T. E. , Larikova, G. A. , & Yanenko, A. S. . (2016). A bacterial strain alcaligenes denitrificans С-32 contains two nitrilases with different substrate specificities. [https://www.researchgate.net/publication/316711055_A_Bacterial_Strain_Alcaligenes_denitrificans_S-32_Contains_Two_Nitrilases_with_Different_Substrate_Specificities 10.21519/0234-2758-2016-32-6-45-52]

Revision as of 15:29, 26 October 2020


adNIT


Overview

Nitrilase coming from Achromobacter denitrificans, catalysis of the reaction: a nitrile + 2H2O = a carboxylate + NH3. The codon usage was optimized for expression in Escherichia coli.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 629
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 191
    Illegal BsaI site found at 374


Primitive Species Background

The type species of gram negative, aerobic bacteria in the genus. A genus of strictly aerobic, non-spore forming rods. Soil and water are regarded as the natural habitat. They are sometimes isolated from a hospital environment and humans. Previously in the genus Alcaligenes, the classification and nomenclature of this species has been frequently emended. The two subspecies, Achromobacter xylosoxidans subsp. denitrificans and Achromobacter xylosoxidans subsp. xylosoxidans are associated with infections.


Design & Experience

In iGEM2020 TPR_China Project, the nhNIT was expressed using pTac system, which was pre-embedded into commercial expression vector pET-28b. The whole expression cassette can be found in BBa_K3599009.


Reference

Novikov, A. D. , Riabchenko, L. E. , Leonova, T. E. , Larikova, G. A. , & Yanenko, A. S. . (2016). A bacterial strain alcaligenes denitrificans С-32 contains two nitrilases with different substrate specificities. 10.21519/0234-2758-2016-32-6-45-52