Difference between revisions of "Part:BBa K3552003"
Line 7: Line 7:
 
The part collection includes:
 
The part collection includes:
 
Parts that are different kinds of type 4 pilus:
 
Parts that are different kinds of type 4 pilus:
 +
<partinfo>BBa_K3552000</partinfo> 
 +
<partinfo>BBa_K3552001</partinfo> 
 +
<partinfo>BBa_K3552002</partinfo>.
 +
Parts that are the generator of the type 4 pilus:
 
<partinfo>BBa_K3552003</partinfo>   
 
<partinfo>BBa_K3552003</partinfo>   
 
<partinfo>BBa_K3552004</partinfo>  
 
<partinfo>BBa_K3552004</partinfo>  
Line 24: Line 28:
 
<partinfo>BBa_K3552027</partinfo>   
 
<partinfo>BBa_K3552027</partinfo>   
 
<partinfo>BBa_K3552028</partinfo>   
 
<partinfo>BBa_K3552028</partinfo>   
−
<partinfo>BBa_K3552029</partinfo>   
+
<partinfo>BBa_K3552029</partinfo>.
 +
Parts that are a complete circuit:
 +
<partinfo>BBa_K3552009</partinfo>   
 +
<partinfo>BBa_K3552010</partinfo> 
 +
<partinfo>BBa_K3552011</partinfo> 
 +
<partinfo>BBa_K3552012</partinfo>.
  
 
Our part collection can instruct other teams to designed new rechargeable pilus and substitution of different major pilin.
 
Our part collection can instruct other teams to designed new rechargeable pilus and substitution of different major pilin.

Revision as of 05:05, 26 October 2020


hofB-hofC(gene from DH5a)

HofB is a transport protein found in bacteria and is ATP-binding and nucleotide-binding, constitute the generator of pilA. HofC is an inner membrane protein, a base for the generator of pilA. This part is in the part collection where we have 13 genes that code for the proteins.

The part collection includes: Parts that are different kinds of type 4 pilus: BBa_K3552000 BBa_K3552001 BBa_K3552002. Parts that are the generator of the type 4 pilus: BBa_K3552003 BBa_K3552004 BBa_K3552005 BBa_K3552006 BBa_K3552007 BBa_K3552008 BBa_K3552018 BBa_K3552019 BBa_K3552020 BBa_K3552021 BBa_K3552022 BBa_K3552023 BBa_K3552024 BBa_K3552025 BBa_K3552026 BBa_K3552027 BBa_K3552028 BBa_K3552029. Parts that are a complete circuit: BBa_K3552009 BBa_K3552010 BBa_K3552011 BBa_K3552012.

Our part collection can instruct other teams to designed new rechargeable pilus and substitution of different major pilin.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 849
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 1778
  • 1000
    COMPATIBLE WITH RFC[1000]

Usage and Biology

The hofC is from the hof operon encoding the generator of major pilin, the ATPase HofB and the platform protein HofC is localized at 3 min of E.coli map. The HofB gene is a ATPase motor which localized at the base of the pilin generator system in the inner membrane, propel the assembly of pilus and it interacts with the platform protein HofC and HofM component of the inner membrane anchored assembly platform complex that also includes HofN and HofO. The hofMNOPQ operon encodes the assembly platform complex connecting HofB ATPase with the secretin hofQ.

Characterization

We first uses the bacteria DH5a as the template and obtain the DNA fragment of 12 genes. We verified the practicability of the generator through the western blot of pilA in vivo which confirmed the usage of the generator because the PilA is able to display outside the cell.