Difference between revisions of "Part:BBa K3594004"
| (3 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
__NOTOC__ | __NOTOC__ | ||
<partinfo>BBa_K3594004 short</partinfo> | <partinfo>BBa_K3594004 short</partinfo> | ||
| − | + | ==Usage and Biology== | |
| + | [[File:T--SHSBNU China--guaiacol degrading gene circuit.png|500px|thumb|center|gene circuit of guaiacol degrading device]] | ||
This composite part is used as the device to degrade guaiacol, one of the aggregation pheromones. It consists basic parts BBa_K3594006 and BBa_K3594014, which is respectively Cytochrome P450 (CYP) and Ferredoxin Reductase (FR), and Plux, which functions as a promotor. | This composite part is used as the device to degrade guaiacol, one of the aggregation pheromones. It consists basic parts BBa_K3594006 and BBa_K3594014, which is respectively Cytochrome P450 (CYP) and Ferredoxin Reductase (FR), and Plux, which functions as a promotor. | ||
| Line 14: | Line 15: | ||
[[File:T--SHSBNU China--The experimental process and the comparison of fluorescence intensity between 0h and 28h.png|500px|thumb|center|The experimental process and the comparison of fluorescence intensity between 0h and 28h]] | [[File:T--SHSBNU China--The experimental process and the comparison of fluorescence intensity between 0h and 28h.png|500px|thumb|center|The experimental process and the comparison of fluorescence intensity between 0h and 28h]] | ||
| + | |||
| + | [[File:T--SHSBNU China--The degradation effect of CYP and FR on guaiacol in the absence (left) and supplementary carbon source (right).jpeg|500px|thumb|center|The degradation effect of CYP and FR on guaiacol in the absence (left) and supplementary carbon source (right)]] | ||
OD values were measured after sampling at 0, 2, 4, 20, 24, and 28h after adding the final concentration of 5mM, indicating that the bacteria were growing normally after adding guaiacol. | OD values were measured after sampling at 0, 2, 4, 20, 24, and 28h after adding the final concentration of 5mM, indicating that the bacteria were growing normally after adding guaiacol. | ||
Latest revision as of 06:51, 24 October 2020
Guaiacol Degrading Enzyme System
Usage and Biology
This composite part is used as the device to degrade guaiacol, one of the aggregation pheromones. It consists basic parts BBa_K3594006 and BBa_K3594014, which is respectively Cytochrome P450 (CYP) and Ferredoxin Reductase (FR), and Plux, which functions as a promotor.
Lane 3 and 4 are plamsmids after overnight culture, and then diluted to M9 and cultured to an OD approximately equal to 0.6,which means that there is no induction. Lane 5 and 6 are plasmids adding IPTG for 3h under 37 degrees centigrade.
Pre-inoculum of PSB4K5_pTac_CYP_FR strains and control PSB4K5 strains were cultured overnight in M9 medium with 10 g/L glucose at 30 °C with orbital shaking at 220 rpm. Guaiacol assimilation experiments were carried out in 250mL shake flasks with 150mL of M9 medium and 1.5 ml inoculum in the same conditions described for the pre-inoculum with guaiacol 5mM. Aliquots were withdrawn regularly for measurement of optical density at 600nm (OD600). Then we used TPR_China’ NAHR sensor analysis of the concentration of guaiacol.
_and_supplementary_carbon_source_(right).jpeg)
OD values were measured after sampling at 0, 2, 4, 20, 24, and 28h after adding the final concentration of 5mM, indicating that the bacteria were growing normally after adding guaiacol.
After the reaction with NAHR Senor of TRP team, which is a sensor that can sense small aromatic molecules, the higher the fluorescence value was, the higher the guaiacol was, and the overall trend of our curve was downward, but there was a rise in the middle, which may be due to the induction effect of the products produced by the degradation of guaiacol. The specific metabolic mechanism needs to be further studied. Time is limited, and we will continue to experiment in the future.
In the future, we determine the activity of enzymes with the synchronized lysis circuit (SLC) because we use this system to improve the degradation effect.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 1332
Illegal XhoI site found at 394 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 34
Illegal NgoMIV site found at 355
Illegal NgoMIV site found at 406
Illegal NgoMIV site found at 841
Illegal NgoMIV site found at 1000
Illegal NgoMIV site found at 1180
Illegal NgoMIV site found at 1305
Illegal AgeI site found at 1416 - 1000COMPATIBLE WITH RFC[1000]