Difference between revisions of "Part:BBa K3634010:Design"

 
(→‎References)
 
(One intermediate revision by the same user not shown)
Line 7: Line 7:
  
 
===Design Notes===
 
===Design Notes===
−
The sequence for O2 was found 401bp downstream of O1, included in the lacZ gene, and was therefore not included as lacZ, lacY and lacA were later replaced by ccdB. The O3 sequence was found to have a 13bp overlap with the CAP binding site therefore was not mutated as this may have affected the CAP binding affinity. The sequence was truncated however where the CAP binding site and O3 5' sequence did not overlap. This was proposed to reduce binding affinity of the repressor. Three mutations were made to the O1 sequence: g91t, t98g and c101g. The native 6bp RBS downstream of lacO1 was also replaced with the weak RBS BBa_B0031 with spacer regions either side left as previous.
+
The sequence for O2 was found 401bp downstream of O1, included in the lacZ gene, and was therefore not included as lacZ, lacY and lacA were later replaced by ccdB. The O3 sequence was found to have a 13bp overlap with the CAP binding site therefore was not mutated as this may have affected the CAP binding affinity. The sequence was truncated however where the CAP binding site and O3 5' sequence did not overlap. This was proposed to reduce binding affinity of the repressor. Three mutations were made to the O1 sequence: g91t, t98g and c101g. The native 6bp RBS downstream of lacO1 was also replaced with the weak RBS BBa_B0031 with spacer regions either side left as previous.
−
 
+
−
 
+
  
 
===Source===
 
===Source===
Line 16: Line 14:
  
 
===References===
 
===References===
 +
 +
Jacob F., Monod J. 1961. Genetic Regulatory Mechanisms in the Synthesis of Proteins. J. Mol. Biol. 3: p818-356.
 +
 +
Gilbert W., Maxam A. 1973. The Nucleotide Sequence of the lac Operator. Proc. Nat. Acad. Sci. USA. 70(12): p3581-3584.
 +
 +
Oehler S., Eismann E.R., Krämer H., Müller-Hill B. 1990. The three operators of the lac operon cooperate in repression. EMBO J. 9(v): p973-979.

Latest revision as of 09:38, 6 August 2020


lacO- + lacP


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The sequence for O2 was found 401bp downstream of O1, included in the lacZ gene, and was therefore not included as lacZ, lacY and lacA were later replaced by ccdB. The O3 sequence was found to have a 13bp overlap with the CAP binding site therefore was not mutated as this may have affected the CAP binding affinity. The sequence was truncated however where the CAP binding site and O3 5' sequence did not overlap. This was proposed to reduce binding affinity of the repressor. Three mutations were made to the O1 sequence: g91t, t98g and c101g. The native 6bp RBS downstream of lacO1 was also replaced with the weak RBS BBa_B0031 with spacer regions either side left as previous.

Source

The lac operon with the associated regulatory upstream components are found natively in E.coli. The initial sequence of the lacO1 was taken from Gilbert and Maxam (1973) and later confirmed by Oehler et al. (1990), where other sequences included in this part and appropriate mutations were gathered.

References

Jacob F., Monod J. 1961. Genetic Regulatory Mechanisms in the Synthesis of Proteins. J. Mol. Biol. 3: p818-356.

Gilbert W., Maxam A. 1973. The Nucleotide Sequence of the lac Operator. Proc. Nat. Acad. Sci. USA. 70(12): p3581-3584.

Oehler S., Eismann E.R., Krämer H., Müller-Hill B. 1990. The three operators of the lac operon cooperate in repression. EMBO J. 9(v): p973-979.