Difference between revisions of "Part:BBa K3002109"
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− | <img src="https://2019.igem.org/wiki/images/ | + | <img src="https://2019.igem.org/wiki/images/9/90/T--TU_Kaiserslautern--resultsFigure13.svg"/> |
− | <p class="caption"><span class="phat"> | + | <p class="caption"><span class="phat">Analysis of secreted MUT-PETase and MHETase with secretion signals cCA, ARS and GLE in the CC-4533 strain background. |
− | + | </span><span class="accent">(a)</span> Transformants generated in the CC-4533 strain background with constructs M and N (Figure 8) were grown in TAP medium for four days. Cells were centrifuged and the supernatant lyophilized, resuspended in 2xSDS buffer and analyzed by SDS-PAGE and immunoblotting with an anti-HA antibody. The supernatant of a culture with the CC-4533 strain were loaded as negative control. The black arrow points to MHETase, the white arrow to MUT-PETase. | |
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</span><span class="accent">(a)</span> Affinity purification of MUT-PETase and MHETase from <i>Chlamydomonas</i> by anti-HA magnetic beads. Transformants M5, C12 and untransformed UVM4 were inoculated in TAP for seven days. Cultures were centrifuged and supernatants incubated with anti-HA magnetic beads for 1 h. Enzymes were purified via biomagnetic separation. Samples of the unconcentrated supernatant (S), of the washing step (W), of the eluted proteins (E) and after 96 h incubation with BHET (A.I.) were analyzed by immunoblotting using an anti-HA antibody. <span class="accent">(b)</span> Proteins eluted from <i>Chlamydomonas</i> transformant M5 (producing MUT-PETase and MHETase) and the UVM4 strain (not producing MUT-PETase and MHETase) were incubated with 1 mM BHET in sodium phosphate (NaPi) buffer at 30°C for 96 h. The standard containing 1 mM TPA, MHET and BHET dissolved in DMSO is shown on top. | </span><span class="accent">(a)</span> Affinity purification of MUT-PETase and MHETase from <i>Chlamydomonas</i> by anti-HA magnetic beads. Transformants M5, C12 and untransformed UVM4 were inoculated in TAP for seven days. Cultures were centrifuged and supernatants incubated with anti-HA magnetic beads for 1 h. Enzymes were purified via biomagnetic separation. Samples of the unconcentrated supernatant (S), of the washing step (W), of the eluted proteins (E) and after 96 h incubation with BHET (A.I.) were analyzed by immunoblotting using an anti-HA antibody. <span class="accent">(b)</span> Proteins eluted from <i>Chlamydomonas</i> transformant M5 (producing MUT-PETase and MHETase) and the UVM4 strain (not producing MUT-PETase and MHETase) were incubated with 1 mM BHET in sodium phosphate (NaPi) buffer at 30°C for 96 h. The standard containing 1 mM TPA, MHET and BHET dissolved in DMSO is shown on top. | ||
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<img src="https://2019.igem.org/wiki/images/7/74/T--TU_Kaiserslautern--resultsFigure20.svg"/> | <img src="https://2019.igem.org/wiki/images/7/74/T--TU_Kaiserslautern--resultsFigure20.svg"/> | ||
<p class="caption"><span class="phat">Measurement of activity of MHETase and MUT-PETase from <i>Chlamydomonas</i> against PET by reversed-phase HPLC. | <p class="caption"><span class="phat">Measurement of activity of MHETase and MUT-PETase from <i>Chlamydomonas</i> against PET by reversed-phase HPLC. | ||
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<h1> The Chlamy Yummy Project Collection </h1> | <h1> The Chlamy Yummy Project Collection </h1> | ||
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− | We are proud to present our MoClo part collection for C. reinhardtii - the <a href="https://2019.igem.org/Team:TU_Kaiserslautern/ | + | We are proud to present our MoClo part collection for C. reinhardtii - the <a href="https://2019.igem.org/Team:TU_Kaiserslautern/Parts"> Chlamy Yummy project collection</a>. |
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The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. | The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. | ||
After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. | After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. | ||
− | Visit our <a href="https://2019.igem.org/Team:TU_Kaiserslautern/ | + | Visit our <a href="https://2019.igem.org/Team:TU_Kaiserslautern/Parts">parts site</a> to get an overview over all parts. |
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Latest revision as of 00:26, 14 December 2019
Level 1 - Mutant PETase + cCA + SP20HA (Phytobrick)
This composite part contains the PAR-promoter (BBa_K3002027) in combination with the RPL23-Terminator (BBa_K3002006), cCA secretion signal (BBa_K3002007), SP20 HA-tag (BBa_K3002010) and the coding sequence of the mutant PETase (BBa_K3002014) plus the MoClo connectors for positions B1-B2 (BBa_K3002302), B2-B3 (BBa_K3002303), B4-B5 (BBa_K3002304) and B5-B6 (BBa_K3002305).
The Mut-PETase in combination with the secretion signal cCA and the SP20-tag showed secretion by C.reinhardtii. In constructs without the SP20-tag no secretion of the MUT-PETase was detectable. This applies for the MUT-PETase in combination with the MHETase. Constructs containing cCA and SP20-tag lead to a high yield of the secreted proteins.
The Chlamy Yummy Project Collection
We are proud to present our MoClo part collection for C. reinhardtii - the Chlamy Yummy project collection.
These 67 parts are all parts used during our project and were specifically designed and codon optimized for Chlamydomonas. Among them are basic parts (L0) of a novel mutant of the PETase (BBa_K3002014), the wildtype PETase and MHETase as well as a variety of functional composite parts (L1+2). Containing different tags as well as selection markers, this collection serves as a perfect base for plastic degradation projects with Chlamydomonas. These parts were tested and optimized thoroughly and we can guarantee that they work 100%. Because this is a MoClo collection, the parts are highly standardized for worldwide application. The combination with other part collections works fast and easy. While in MoClo, nomenclature is a bit different from the iGEM BioBricks, it is quickly explained:
Level 0 parts are equivalent to basic parts, e.g. Promoters, coding sequences, etc.
Level 1 parts are combinations of basic parts and usually form functional transcription units.
Level 2 parts are combinations of Level 1 parts, in case you want to transfer multiple transcription units at once. For example, you can pair your gene of interest with a selection marker.
The great thing about the Kaiser Collection and MoClo is that the ligation works in a one pot, one step reaction, as the Type IIs restriction enzymes cut out their own recognition sites. This way, multiple constructs can be combined linearly in a fixed order to create complex structures. This is ensured by the standardized overlaps that assign the parts one of 10 positions in the final constructs. After trying MoClo once, you won’t go back to traditional ligation. It is incredibly easy and reliable. Visit our parts site to get an overview over all parts.
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 1069
Illegal PstI site found at 2042 - 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 249
Illegal PstI site found at 1069
Illegal PstI site found at 2042 - 21COMPATIBLE WITH RFC[21]
- 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 1069
Illegal PstI site found at 2042 - 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 1069
Illegal PstI site found at 2042
Illegal NgoMIV site found at 804
Illegal NgoMIV site found at 831
Illegal NgoMIV site found at 2602 - 1000COMPATIBLE WITH RFC[1000]