Difference between revisions of "Part:BBa K2935073"
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<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K2935073 SequenceAndFeatures</partinfo> | <partinfo>BBa_K2935073 SequenceAndFeatures</partinfo> | ||
| − | + | BBa_K2935073 (677bp) in saccharomyces cerevisiae chromosome S288C I position 205985-206661. | |
| + | In the genome of saccharomyces cerevisiae, most of the genes contain repeated sequences. Verstrepen,K.J. et al. [1] compared its effect on eight newly generated FLO1 alleles.It was found that as the Flo1 protein became longer (carrying more repeated sequences), the adhesion increased.Flocculation (i.e., adhesion to other yeast cells) showed a quantitative relationship between the same number of repetitions and the number of repetitions: the more repetitions, the greater the proportion of flocculated cells.The correlation between the number of repetitions observed and functional acquisition Flo1 depends on the specific amino acid encoded by the repeat sequence. | ||
| + | To look for in-gene duplication, they used EMBOSS ETANDEMsoftware26 to screen all sacs ORFs sequences.Two separate screens screened short (3-39 nt) and long (440 nt) repeats, respectively. | ||
| + | They ended up with BBa_K2935073 (677bp) as the basis and common piece of all FLO1. | ||
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<partinfo>BBa_K2935073 parameters</partinfo> | <partinfo>BBa_K2935073 parameters</partinfo> | ||
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| + | REFERENCE:Intragenic tandem repeats generate functional variability.Verstrepen,K.J., Jansen,A., Lewitter,F. and Fink,G.R. Nat. Genet. 37 (9), 986-990 (2005) | ||
Revision as of 01:01, 22 October 2019
Flo1
Flo1
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal SpeI site found at 121
- 12INCOMPATIBLE WITH RFC[12]Illegal SpeI site found at 121
- 21COMPATIBLE WITH RFC[21]
- 23INCOMPATIBLE WITH RFC[23]Illegal SpeI site found at 121
- 25INCOMPATIBLE WITH RFC[25]Illegal SpeI site found at 121
Illegal AgeI site found at 25
Illegal AgeI site found at 67
Illegal AgeI site found at 202
Illegal AgeI site found at 472 - 1000COMPATIBLE WITH RFC[1000]
BBa_K2935073 (677bp) in saccharomyces cerevisiae chromosome S288C I position 205985-206661. In the genome of saccharomyces cerevisiae, most of the genes contain repeated sequences. Verstrepen,K.J. et al. [1] compared its effect on eight newly generated FLO1 alleles.It was found that as the Flo1 protein became longer (carrying more repeated sequences), the adhesion increased.Flocculation (i.e., adhesion to other yeast cells) showed a quantitative relationship between the same number of repetitions and the number of repetitions: the more repetitions, the greater the proportion of flocculated cells.The correlation between the number of repetitions observed and functional acquisition Flo1 depends on the specific amino acid encoded by the repeat sequence. To look for in-gene duplication, they used EMBOSS ETANDEMsoftware26 to screen all sacs ORFs sequences.Two separate screens screened short (3-39 nt) and long (440 nt) repeats, respectively. They ended up with BBa_K2935073 (677bp) as the basis and common piece of all FLO1.
REFERENCE:Intragenic tandem repeats generate functional variability.Verstrepen,K.J., Jansen,A., Lewitter,F. and Fink,G.R. Nat. Genet. 37 (9), 986-990 (2005)