Difference between revisions of "Part:BBa K3113010"

 
 
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<partinfo>BBa_K3113010 short</partinfo>
 
<partinfo>BBa_K3113010 short</partinfo>
  
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MS2 Coat Protein (MCP) is a capsid protein that self-assembles to a capsid. The protein acts as an adapter for RNA binding into etracellular vesicles. The protein binds to the MS2-stemloop and loads mRNA into the extracellular vesicles.
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MS2 Coat Protein (MCP) is a capsid protein that self-assembles to a capsid. The protein acts as an adapter for RNA binding into extracellular vesicles. The protein binds to the MS2-stemloop and loads mRNA into the extracellular vesicles.
  
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<h2>Usage</h2>
  
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The informational readout of ALiVE is RNA. To load a specific RNA into the vesicles we fused it to RNA-motifs which are bound specifically by RNA binding proteins. Two combinations of binding protein and motif were tested. One was MCP, the MS2 bacteriophage coat protein, which binds to the MS2 RNA motif.
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<h2>Biology</h2>
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The coat protein of the RNA bacteriophage MS2 binds a specific stem-loop structure in viral RNA to accomplish encapsidation of the genome and translational repression of replicase synthesis. <ref>Peabody, D S. “The RNA binding site of bacteriophage MS2 coat protein.” The EMBO journal vol. 12,2 (1993): 595-600.</ref>
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Bacteriophage MS2 is an icosahedral virus with 180 copies of a coat protein forming a shell around a single-stranded RNA molecule.<ref>The refined structure of bacteriophage MS2 at 2.8-A resolution. Golmohammadi R., Valegaard K., Fridborg K., Liljas L. J. Mol. Biol. 234:620-639(1993)</ref>
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<h2>Characterization</h2>
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<h3>Western Blot</h3>
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<html>
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<figure class="figure">
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        <img src="https://2019.igem.org/wiki/images/4/4f/T--Munich--WesternBlot_CC_test.png" width="50%" class="figure-img img-fluid rounded" alt=" ">
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        <figcaption style="font-size: 80%">
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          <b>Figure 1: </b>The presence of vesicular components modularly composed with coiled-coils and directly fused could be proven by western blotting. Top left) the exosomal marker cdc63 can be visualized with primary anti-cdc63 mouse-antibody and secondary anti-mouse antibody - horse radish peroxidase (HRP) fusion. CDC63 does not run as a tight band on the blot because of glycosylation patterns and its nature as a membrane protein. Top right) Gag-protein is determined at around 70 kDa. The fusion construct Gag-HiBiT-L7Ae shows some degradation corresponding to the molecular weight of L7Ae cleavage. Bottom) MCP RNA-binding proteins can be shown with anti-MCP antibodies.
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        </figcaption>
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    </figure>
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</html>
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<h3>Vesicle Export in HEK293T</h3>
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<html>
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<figure class="figure">
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        <img src="https://2019.igem.org/wiki/images/3/39/T--Munich--HiBiT_EXO_HEK_expression_and_export_appx.png" width="50%" class="figure-img img-fluid rounded" alt=" ">
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        <figcaption style="font-size: 80%"><b>
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          Figure 2: Extended version with more CD63 constructs shown.</b>
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        </figcaption>
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    </figure>
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</html>
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<h3>Expression and Export in VLPs</h3>
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<html>
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<figure class="figure">
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        <img src="https://2019.igem.org/wiki/images/e/e6/T--Munich--HiBiT_VLP_expression_and_export_coiled.png" width="50%" class="figure-img img-fluid rounded" alt=" ">
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        <figcaption style="font-size: 80%"><b>
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          Figure 3:</b> Expression and export of VLPs consisting of Gag proteins interacting with the RBPs L7Ae and MCP through the P9SN/P10SN coiled-coil system monitored through the HiBiT assay.
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        </figcaption>
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    </figure>
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</html>
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<html>
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<h3>Expression and Export in Exosomes</h3>
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<html>
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<figure class="figure">
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        <img src="https://2019.igem.org/wiki/images/f/fd/T--Munich--HiBiT_Exo_expression_and_export_coiled.png"
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width="50%" class="figure-img img-fluid rounded" alt=" ">
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        <figcaption style="font-size: 80%">
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          <b>Figure 4:</b> Expression and export of exosomes consisting of CD63 proteins interacting with the RBPs L7Ae and MCP through the P9SN/P10SN coiled-coil system monitored through the HiBiT assay.
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        </figcaption>
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    </figure>
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</html>
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<h3>Viability</h3>
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<html>
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<figure class="figure">
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        <img src="https://2019.igem.org/wiki/images/4/4b/T--Munich--Viability_Results.png"
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width="85%" class="figure-img img-fluid rounded" alt=" ">
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        <figcaption style="font-size: 80%">
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          <b>Figure 5:</b> Vesicle production is not decreasing cell viability.</b> Cell viability was determined using a cytotoxicity assay at different time points after transfection to monitor possible long-term effects of VLP or exosome expression.  Measurements were performed for n = 3 biological replicates. A) Cells were transfected with two different VLP constructs (Gag-CC-L7Ae, Gag-CC-MCP), a negative control to simulate transfection stress (Mock) and a positive control (untransfected). B) Cells were transfected with two different exosome constructs (CD63-L7Ae, CD63-MCP), a negative control to simulate transfection stress (Mock) and a positive control (untransfected).
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        </figcaption>
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    </figure>
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===Usage and Biology===
 
  
 
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<partinfo>BBa_K3113010 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K3113010 SequenceAndFeatures</partinfo>
  
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<h2>References</h2>
  
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  

Latest revision as of 23:54, 21 October 2019


MCP

MS2 Coat Protein (MCP) is a capsid protein that self-assembles to a capsid. The protein acts as an adapter for RNA binding into extracellular vesicles. The protein binds to the MS2-stemloop and loads mRNA into the extracellular vesicles.

Usage

The informational readout of ALiVE is RNA. To load a specific RNA into the vesicles we fused it to RNA-motifs which are bound specifically by RNA binding proteins. Two combinations of binding protein and motif were tested. One was MCP, the MS2 bacteriophage coat protein, which binds to the MS2 RNA motif.

Biology

The coat protein of the RNA bacteriophage MS2 binds a specific stem-loop structure in viral RNA to accomplish encapsidation of the genome and translational repression of replicase synthesis. [1] Bacteriophage MS2 is an icosahedral virus with 180 copies of a coat protein forming a shell around a single-stranded RNA molecule.[2]


Characterization

Western Blot

Figure 1: The presence of vesicular components modularly composed with coiled-coils and directly fused could be proven by western blotting. Top left) the exosomal marker cdc63 can be visualized with primary anti-cdc63 mouse-antibody and secondary anti-mouse antibody - horse radish peroxidase (HRP) fusion. CDC63 does not run as a tight band on the blot because of glycosylation patterns and its nature as a membrane protein. Top right) Gag-protein is determined at around 70 kDa. The fusion construct Gag-HiBiT-L7Ae shows some degradation corresponding to the molecular weight of L7Ae cleavage. Bottom) MCP RNA-binding proteins can be shown with anti-MCP antibodies.

Vesicle Export in HEK293T

Figure 2: Extended version with more CD63 constructs shown.

Expression and Export in VLPs

Figure 3: Expression and export of VLPs consisting of Gag proteins interacting with the RBPs L7Ae and MCP through the P9SN/P10SN coiled-coil system monitored through the HiBiT assay.

Expression and Export in Exosomes

Figure 4: Expression and export of exosomes consisting of CD63 proteins interacting with the RBPs L7Ae and MCP through the P9SN/P10SN coiled-coil system monitored through the HiBiT assay.

Viability

Figure 5: Vesicle production is not decreasing cell viability. Cell viability was determined using a cytotoxicity assay at different time points after transfection to monitor possible long-term effects of VLP or exosome expression. Measurements were performed for n = 3 biological replicates. A) Cells were transfected with two different VLP constructs (Gag-CC-L7Ae, Gag-CC-MCP), a negative control to simulate transfection stress (Mock) and a positive control (untransfected). B) Cells were transfected with two different exosome constructs (CD63-L7Ae, CD63-MCP), a negative control to simulate transfection stress (Mock) and a positive control (untransfected).


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


References

  1. ↑ Peabody, D S. “The RNA binding site of bacteriophage MS2 coat protein.” The EMBO journal vol. 12,2 (1993): 595-600.
  2. ↑ The refined structure of bacteriophage MS2 at 2.8-A resolution. Golmohammadi R., Valegaard K., Fridborg K., Liljas L. J. Mol. Biol. 234:620-639(1993)