Difference between revisions of "Part:BBa K3046001:Design"

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===Design Notes===
 
===Design Notes===
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This part is created on the basis of the upstream region of the glaA ORF (Systematic ORF name: An03g06550) of many <i>aspergillus</i> genomes. It has been created using the proHMMoter software with added noise, as a part of the LEAP project, described in further detail here: https://2019.igem.org/Team:DTU-Denmark/Model
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This part is optimised to be compatible with the MoClo standard, Mobius assembly standard and not to contain any SwaI cut sites.
  
 
===Source===
 
===Source===
  
−
This part is created on the basis of the upstream region of the GlaA ORF (Systematic ORF name: An03g06550).  
+
This part is created on the basis of the upstream region of the glaA ORF (Systematic ORF name: An03g06550) of many <i>aspergillus</i> genomes. It has been created using the proHMMoter software with added noise, as a part of the LEAP project, described in further detail here: https://2019.igem.org/Team:DTU-Denmark/Model
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It has been creating using the LEAP software, as descriped here: [insert link to wiki]
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===References===
 
===References===
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[1] P. Schape et al., “Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks.,” Nucleic Acids Res., vol. 47, no. 2, pp. 559–569, Jan. 2019.

Latest revision as of 17:29, 21 October 2019


PLEAPglaA_2


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 50
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

This part is optimised to be compatible with the MoClo standard, Mobius assembly standard and not to contain any SwaI cut sites.

Source

This part is created on the basis of the upstream region of the glaA ORF (Systematic ORF name: An03g06550) of many aspergillus genomes. It has been created using the proHMMoter software with added noise, as a part of the LEAP project, described in further detail here: https://2019.igem.org/Team:DTU-Denmark/Model

References

[1] P. Schape et al., “Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks.,” Nucleic Acids Res., vol. 47, no. 2, pp. 559–569, Jan. 2019.