Difference between revisions of "Part:BBa K2904082"
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===The construction of this part=== | ===The construction of this part=== | ||
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| − | This part was used to validate | + | This part was used to validate the effect of Tuner S. We employed repressing Btub riboswitch, which can regulate the expression of TonB-dependent vitamin B12 receptor BtuB by binding adenosylcobalamin in <i>Escherichia coli</i>.The first 150bp of BtuB was chosen as Stabilizer of Btub riboswitch because our docking matrix suggested that a normal riboswitch structure would be observed when using this length of Stabilizer. We used [https://parts.igem.org/Part:BBa_K2904110 sfGFP]as the reporter gene to reflect output of our system. Besides, [https://parts.igem.org/Part:BBa_K2904005 Tuner S] was inserted between Stabilizer and sfGFP. The modular Btub riboswitch containing the original riboswitch, Stabilizer and Tuner S was under control of [https://parts.igem.org/Part:BBa_K2904111 the tetracycline promoter], which was induced by aTc. |
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==<strong>Result</strong>== | ==<strong>Result</strong>== | ||
| − | We | + | We tested our system by microplate reader, which is used to reflect the intensity of sfGFP changing over time. The following chart shows the dynamic curve measured every two hours. It can prove that the modular Btub riboswitch containing Tuner S can restore the structure of riboswitch and control the downstream gene expression during the whole cultivation period. |
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| − | + | [[Image:T--OUC-China--082microplate.jpg|center|thumb|400px|'''Figure2: The results of modular Btub riboswitch containing Tuner S by microplate reader.''' ]] | |
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| − | [[Image:T--OUC-China-- | + | |
==<strong>Summary</strong>== | ==<strong>Summary</strong>== | ||
<p> | <p> | ||
| − | This year, we achieved a rational design principle of modular riboswitch. Many Tuners was utilized for tunable and efficient gene regulation. | + | This year, we achieved a rational design principle of modular riboswitch. Many Tuners was utilized for tunable and efficient gene regulation. To validate Tuners can change the response curve of riboswitch, we constructed modular Btub riboswitches including Tuner A, E and S respectively. All circuits selected sfGFP as the target gene. Using different Tuners, muti-level regulation can be achieved. |
<br> | <br> | ||
[http://2019.igem.org/Team:OUC-China/Model The method we used to design different Tuners is on this page!] | [http://2019.igem.org/Team:OUC-China/Model The method we used to design different Tuners is on this page!] | ||
<br> | <br> | ||
| − | The results demonstrate that these Tuners are capable of shifting and tuning the induction response of modular Btub riboswitches. | + | The microplate reader was used to measure the fluorescence intensity of sfGFP. Data is shown for each construct until steady state is reached (at least two consecutive subsequent data points do not increase fluorescence). The results demonstrate that these Tuners are capable of shifting and tuning the induction response of modular Adda riboswitches. |
| + | <br> | ||
| + | [[Image:T--OUC-China--btubpoint.jpg|center|thumb|400px|'''Figure4: The results of modular Btub riboswitch containing different Tuners by microplate reader.''' ]] | ||
| + | <br> | ||
| + | <br> | ||
| + | By all the experiments mentioned before, we proved that Tuners work as expectations successfully. They are expected to serve as a powerful and tunable tool of riboswitch for future iGEM teams based on their demand. | ||
| + | <br> | ||
| + | If you are interested in the other parts we designed, you can click modular riboswitches containing [https://parts.igem.org/Part:BBa_K2904080 Tuner A] and [https://parts.igem.org/Part:BBa_K2904081 Tuner E]. | ||
<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here | ||
Latest revision as of 10:48, 21 October 2019
aTc inducible sfGFP regulated by modular Btub riboswitch containing Tuner S
Design
Background of 2019 OUC-China's project——RiboLego
Due to context-dependent performance and limited dynamic range, the widespread application of riboswitches is currently restricted. By replacing its original ORF with a new one, the structure of an aptamer domain can be subtly disrupted, resulting in a loss of ligand response. So riboswitch is still not be considered as a ‘plug and play' device. To tackle these problems, our project focuses on a standardized design principle to be used for modular and tunable riboswitch. The modular riboswitch we defined consists of the original riboswitch, Stabilizer and Tuner. Stabilizer can protect the structure of riboswitch from damage while Tuner can reduce the expression probability of fusion protein and make improvement of riboswitch function.
The construction of this part
This part was used to validate the effect of Tuner S. We employed repressing Btub riboswitch, which can regulate the expression of TonB-dependent vitamin B12 receptor BtuB by binding adenosylcobalamin in Escherichia coli.The first 150bp of BtuB was chosen as Stabilizer of Btub riboswitch because our docking matrix suggested that a normal riboswitch structure would be observed when using this length of Stabilizer. We used sfGFPas the reporter gene to reflect output of our system. Besides, Tuner S was inserted between Stabilizer and sfGFP. The modular Btub riboswitch containing the original riboswitch, Stabilizer and Tuner S was under control of the tetracycline promoter, which was induced by aTc.
Result
We tested our system by microplate reader, which is used to reflect the intensity of sfGFP changing over time. The following chart shows the dynamic curve measured every two hours. It can prove that the modular Btub riboswitch containing Tuner S can restore the structure of riboswitch and control the downstream gene expression during the whole cultivation period.
Summary
This year, we achieved a rational design principle of modular riboswitch. Many Tuners was utilized for tunable and efficient gene regulation. To validate Tuners can change the response curve of riboswitch, we constructed modular Btub riboswitches including Tuner A, E and S respectively. All circuits selected sfGFP as the target gene. Using different Tuners, muti-level regulation can be achieved.
[http://2019.igem.org/Team:OUC-China/Model The method we used to design different Tuners is on this page!]
The microplate reader was used to measure the fluorescence intensity of sfGFP. Data is shown for each construct until steady state is reached (at least two consecutive subsequent data points do not increase fluorescence). The results demonstrate that these Tuners are capable of shifting and tuning the induction response of modular Adda riboswitches.
By all the experiments mentioned before, we proved that Tuners work as expectations successfully. They are expected to serve as a powerful and tunable tool of riboswitch for future iGEM teams based on their demand.
If you are interested in the other parts we designed, you can click modular riboswitches containing Tuner A and Tuner E.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal XhoI site found at 1
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 257
- 1000INCOMPATIBLE WITH RFC[1000]Illegal SapI.rc site found at 571