Difference between revisions of "Part:BBa K2996011"
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<partinfo>BBa_K2996011 short</partinfo> | <partinfo>BBa_K2996011 short</partinfo> | ||
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This composite part is the core of our pRead plasmid in information storage device, where input signal is recorded as a permanent spacer. | This composite part is the core of our pRead plasmid in information storage device, where input signal is recorded as a permanent spacer. | ||
The ribosome-binding site and the translation initiation codon of this reading device are indicated. Translation of transcripts generated from the tac promoter will stop at the leader, for those two stop codons. | The ribosome-binding site and the translation initiation codon of this reading device are indicated. Translation of transcripts generated from the tac promoter will stop at the leader, for those two stop codons. | ||
The wrong reading frame and existing stop codon together will insure no expression of the florescent protein in the original situation. | The wrong reading frame and existing stop codon together will insure no expression of the florescent protein in the original situation. | ||
| − | <li style="display: inline-block;"> [[File:T--SJTU-BioX-Shanghai--wet_lab-before.png|thumb|none|500px|'''Schematic representation of pRead before induction.''']] | + | <div><ul> <li style="display: inline-block;"> [[File:T--SJTU-BioX-Shanghai--wet_lab-before.png|thumb|none|500px|'''Schematic representation of pRead before induction.''']] |
<div><ul> <li style="display: inline-block;"> [[File:T--SJTU-BioX-Shanghai--wet_lab-after.png|thumb|none|600px|'''Schematic representation of pRead after induction.''']] | <div><ul> <li style="display: inline-block;"> [[File:T--SJTU-BioX-Shanghai--wet_lab-after.png|thumb|none|600px|'''Schematic representation of pRead after induction.''']] | ||
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Revision as of 13:36, 20 October 2019
RSRL-eGFP downstream of pTac
This composite part is the core of our pRead plasmid in information storage device, where input signal is recorded as a permanent spacer.
The ribosome-binding site and the translation initiation codon of this reading device are indicated. Translation of transcripts generated from the tac promoter will stop at the leader, for those two stop codons. The wrong reading frame and existing stop codon together will insure no expression of the florescent protein in the original situation.
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- File:T--SJTU-BioX-Shanghai--wet lab-after.pngSchematic representation of pRead after induction.
Upon information input, that is addition of corresponding inducer, spacer adaptation from cas1/2 will result in an addition of 61 base pairs, 33bp new spacer and 28bp replicated repeat, into the integration cassette. Stop codon will be moved out of frame, while EGFP in the open reading frame. Thus, successful translation of EGFP is our desired information output signal, observed by eyes and microplate reader.
Experiment and Result
1.Overnight cultures of co-transformants were transferred and incubated at 37℃, 200rpm until cells grew into exponential stage. 2.Samples were then trisected for different induction patterns. 3.Positive samples were induced with both tetracycline and IPTG. Negative samples were induced with tetracycline only. Blank samples were not induced as control group. Samples were then incubated overnight at 20℃ for 16h. 4.OD600 and fluorescence data were acquired from microplate reader, with excitation wavelength at 485nm and emission wavelength at 528nm. OD600 of all samples were adjusted to 0.5 before fluorescence measurement.
Cells induced with IPTG and tetracycline showed significant increase in fluorescence value, indicating successful signal input. However, induction of sole tetracycline displayed a similar effect, indicating ineffectiveness of IPTG induction. This is due to high base expression of tac promoter, confirmed by our further experiments.Microscope
Sequence and Features
Assembly Compatibility:- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 252
Illegal BamHI site found at 978 - 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
- 10
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