Difference between revisions of "Part:BBa K2997000"

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===Background===
 
===Background===
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It’s the gene encode for tyrosine transporter that is involved in transporting tyrosine across the cytoplasmic membrane.
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It’s a gene that encodes for tyrosine transporter, which is involved in transporting tyrosine across the cytoplasmic membrane.
 
Hence, we used PCR to amplify this gene from <i>E. coli</i> MG1655 and incorporated it to our <i>E. coli</i>, allowing it to take in more tyrosine.
 
Hence, we used PCR to amplify this gene from <i>E. coli</i> MG1655 and incorporated it to our <i>E. coli</i>, allowing it to take in more tyrosine.
  
 
===Expression in <i>E. coli</i>===
 
===Expression in <i>E. coli</i>===
−
We amplified the tyrP gene and its native promoter from <i>E. coli</i> MG1655 and clone it into pSB4A3. Then transformed the plasmid into DH5α and <i>E. coli</i> Nissle 1917. Plasmid extraction after the colony formed and follow up by enzyme digestion to confirm the insertion was successful.
+
We amplified the <i>tyrP</i> gene and its native promoter from <i>E. coli</i> MG1655 and clone it into pSB4A3. Then transformed the plasmid into DH5α and <i>E. coli</i> Nissle 1917. Plasmid extraction after the colony formed and follow up by enzyme digestion to confirm the insertion was successful.
 
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Fig. 1. Confirmation of BBa_K2997000 by double digestion. M: Marker; Lane 1: BBa_K2997000, arrow indicates <i>P<sub>tyrP</sub></i>-<i>tyrP</i> insert at 1307bp; Lane 2: pSB4A3-J04450 (negative control).
  
 
===TAL and TyrP Functional Assay===
 
===TAL and TyrP Functional Assay===
−
We performed a functional test using n-octanol extraction method (https://2019.igem.org/Team:NCKU_Tainan/Protocols)
+
To confirm the protein activity of TAL and TyrP, we performed a functional test using <i>n</i>-octanol extraction method (https://2019.igem.org/Team:NCKU_Tainan/Protocols), which was previously proposed by iGEM Uppsala 2013 and has been verified by HPLC<sup>[1]</sup>. The <i>p</i>-Coumaric acid concentration was measured through the absorbance value at 310nm wavelength under Nanodrop UV-Vis wavelength. The standard curve of <i>p</i>-Coumaric acid was drawn in Fig.2 to determine the relationship between <i>p</i>-Coumaric acid concentrations and its 310nm arbitrary unit (a.u). Our samples with TAL constructs were then mapped onto the standard curve, to know how much <i>p</i>-Coumaric acid is being produced.  
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, and with this assay, we can further improve the conversion of tyrosine into p-Coumaric acid by adding a tyrosine transporter (BBa_K2997000). As seen in figure, when BBa_K2997000 is added, the production of p-Coumaric acid is significantly higher than bacteria only carrying BBa_K2997009 or BBa_K2997010. When tyrosine transporter is introduced into E. coli Nissle containing BBa_K2997009 and BBa_K2997010, conversion of tyrosine into p-Coumaric acid is increased by 1.44-fold and 1.31-fold respectively.
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<img src="https://2019.igem.org/wiki/images/d/d3/T--NCKU_Tainan--Results_tyrosine_to_pCA%2C_RBS_improve.png" style="width:35%;">
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<img src="https://2019.igem.org/wiki/images/1/1f/T--NCKU_Tainan--Standard_Curve_48hr.png" style="width:45%;">
 
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Fig. 2. The standard curve of <i>p</i>-Coumaric acid concentration in correlation with absorbance at 310nm, which is provided by genetic <i>E. coli</i> Nissle in LB broth after 48 hours.
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Using this assay, We can further improve the conversion of tyrosine into <i>p</i>-Coumaric acid by adding a tyrosine transporter (BBa_K2997000). As seen in Fig. 2, when tyrosine transporter is added, the production of <i>p</i>-Coumaric acid is significantly higher than when it is not added. When tyrosine transporter (BBa_K2997000) is introduced into <i>E. coli</i> Nissle with TAL constructs containing native RBS (BBa_K2997009) and B0034 RBS (BBa_K2997010), conversion of tyrosine into <i>p</i>-Coumaric acid is increased by 1.44-fold and 1.31-fold respectively.
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<img src="https://2019.igem.org/wiki/images/d/d3/T--NCKU_Tainan--Results_tyrosine_to_pCA%2C_RBS_improve.png" style="width:40%;">
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Fig. 3. <i>p</i>-Coumaric acid/O.D.600 levels of <i>E. coli</i> Nissle with TAL and <i>tyrP</i> in LB with 1mM tyrosine
  
  
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===Reference===
 
===Reference===
−
Wookey, P. J., & Pittard, A. J. (1988). DNA sequence of the gene (tyrP) encoding the tyrosine-specific transport system of <i>Escherichia<i/> coli. Journal of Bacteriology, 170(10), 4946–4949. doi: 10.1128/jb.170.10.4946-4949.1988
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[1] Wookey, P. J., & Pittard, A. J. (1988). DNA sequence of the gene (tyrP) encoding the tyrosine-specific transport system of <i>Escherichia<i/> coli. Journal of Bacteriology, 170(10), 4946–4949. doi: 10.1128/jb.170.10.4946-4949.1988

Latest revision as of 12:32, 20 October 2019


Tyrosine transporter (tyrP)

Background

It’s a gene that encodes for tyrosine transporter, which is involved in transporting tyrosine across the cytoplasmic membrane. Hence, we used PCR to amplify this gene from E. coli MG1655 and incorporated it to our E. coli, allowing it to take in more tyrosine.

Expression in E. coli

We amplified the tyrP gene and its native promoter from E. coli MG1655 and clone it into pSB4A3. Then transformed the plasmid into DH5α and E. coli Nissle 1917. Plasmid extraction after the colony formed and follow up by enzyme digestion to confirm the insertion was successful.


Fig. 1. Confirmation of BBa_K2997000 by double digestion. M: Marker; Lane 1: BBa_K2997000, arrow indicates PtyrP-tyrP insert at 1307bp; Lane 2: pSB4A3-J04450 (negative control).

TAL and TyrP Functional Assay

To confirm the protein activity of TAL and TyrP, we performed a functional test using n-octanol extraction method (https://2019.igem.org/Team:NCKU_Tainan/Protocols), which was previously proposed by iGEM Uppsala 2013 and has been verified by HPLC[1]. The p-Coumaric acid concentration was measured through the absorbance value at 310nm wavelength under Nanodrop UV-Vis wavelength. The standard curve of p-Coumaric acid was drawn in Fig.2 to determine the relationship between p-Coumaric acid concentrations and its 310nm arbitrary unit (a.u). Our samples with TAL constructs were then mapped onto the standard curve, to know how much p-Coumaric acid is being produced.


Fig. 2. The standard curve of p-Coumaric acid concentration in correlation with absorbance at 310nm, which is provided by genetic E. coli Nissle in LB broth after 48 hours.

Using this assay, We can further improve the conversion of tyrosine into p-Coumaric acid by adding a tyrosine transporter (BBa_K2997000). As seen in Fig. 2, when tyrosine transporter is added, the production of p-Coumaric acid is significantly higher than when it is not added. When tyrosine transporter (BBa_K2997000) is introduced into E. coli Nissle with TAL constructs containing native RBS (BBa_K2997009) and B0034 RBS (BBa_K2997010), conversion of tyrosine into p-Coumaric acid is increased by 1.44-fold and 1.31-fold respectively.



Fig. 3. p-Coumaric acid/O.D.600 levels of E. coli Nissle with TAL and tyrP in LB with 1mM tyrosine


Sequence and Features


Assembly Compatibility:
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    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 278
  • 1000
    COMPATIBLE WITH RFC[1000]


Reference

[1] Wookey, P. J., & Pittard, A. J. (1988). DNA sequence of the gene (tyrP) encoding the tyrosine-specific transport system of Escherichia<i/> coli. Journal of Bacteriology, 170(10), 4946–4949. doi: 10.1128/jb.170.10.4946-4949.1988