Difference between revisions of "Part:BBa K3114006"

Revision as of 22:00, 19 October 2019

Water-soluble chlorophyll binding protein (6GIX) with 6xHis tag

Usage and Biology

6GIX is a 180-amino acid water-soluble chlorophyll binding protein (WSCP) which is hypothesized to play a role as a transient chlorophyll shuttle or to be involved in anti-photobleaching responses in Lepidium virginicum (Takahashi et al., 2013). 6GIX is capable of binding chlorophyll a and b, but it has been shown to have higher affinity for chlorophyll b (Bednarczyk, Takahashi, Satoh, & Noy, 2015; Palm et al., 2018).

6GIX exists as a homotetramer that is capable of binding four chlorophyll molecules (Bednarczyk, Takahashi, Satoh, & Noy, 2015). Chlorophyll is a hydrophobic pigment and is therefore soluble only in organic solvents. This part can be used for aqueous phase capture of chlorophyll using emulsions.

iGEM Calgary successfully created seven inducible genetic circuits for high-level production of 6GIX using various parts from our collection.

• DsbA signal peptide 6GIX circuit (BBa_K3114016)
• MalE signal peptide 6GIX circuit (BBa_K3114017)
• OmpA signal peptide 6GIX circuit (BBa_K3114018)
• PhoA signal peptide 6GIX circuit (BBa_K3114019)
• YcbK signal peptide 6GIX circuit (BBa_K3114020)
• TorA signal peptide 6GIX circuit (BBa_K3114021)
• 6GIX circuit with no signal peptide (BBa_K3114022)

Figure 2. iGEM Calgary's genetic construct scheme. Each construct consists of a T7 inducible promoter, a strong RBS, one of six signal peptides, the water-soluble chlorophyll binding protein 6GIX with a 6X His tag, and a bidirectional terminator.

Design

When designing this part and the rest of our collection, we were interested in creating parts that could be used in Golden Gate assembly right out of the distribution kit without the need to first domesticate them in a Golden Gate entry vector. As such, these parts are not compatible with the iGEM Type IIS RFC[1000] assembly standard because we included the BsaI restriction site and MoClo standard fusion site in the part’s sequence.

As per the MoClo standard, the 5’ cds fusion sequence included in this part is AGGT, and the 3’ cds fusion sequence is GCTT (Weber et al., 2011).

Figure 1. Fusion sites used in the MoClo standard for Golden Gate assembly (Weber et al., 2011).

This part does not contain a start codon, as it was designed to be used with one of the signal peptides in the collection. The native L. virginicum signal peptide was excluded from this sequence. A double stop codon was introduced to the sequence.

A 6X Histidine affinity chromatography tag was added to the N-terminus of this sequence for purification. Our modelling informed us that this tag would likely not interfere with 6GIX’s folding or function. Regardless, we added a thrombin proteolytic site between the tag and the 6GIX sequence in case it needed to be removed following purification.

The sequence has been codon optimized for high expression in E. coli.

Characterization

Sequence and Features

References