Difference between revisions of "Part:BBa K2973013:Design"

 
 
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===Design Notes===
 
===Design Notes===
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dds
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This composite part was designed in order to achieve the transcription of a small part of the 16S rRNA gene of Geobacillus kaustophilus. This part behaves as a trigger sequence that will activate the Toehold switch 13 (BBa_K2973011).
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===Source===
 
===Source===
  
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Geobacillus kaustophilus strain BGSC 90A1 16S ribosomal RNA, complete sequence
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NCBI Reference Sequence: NR_115285.2
  
 
===References===
 
===References===
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Pardee, Keith, et al. “Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.” Cell, vol. 165, no. 5, 2016, pp. 1255–1266., doi:10.1016/j.cell.2016.04.059.
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Green, Alexander A., et al. “Toehold Switches: De-Novo-Designed Regulators of Gene Expression.” Cell, vol. 159, no. 4, 2014, pp. 925–939., doi:10.1016/j.cell.2014.10.002.
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J. N. Zadeh, C. D. Steenberg, J. S. Bois, B. R. Wolfe, M. B. Pierce, A. R. Khan, R. M. Dirks, N. A. Pierce. NUPACK: analysis and design of nucleic acid systems. J Comput Chem, 32:170–173, 2011.
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http://www.nupack.org

Latest revision as of 21:11, 19 October 2019


Trigger for Toehold switch 13 Geobacillus kaustophilus


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 64
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

This composite part was designed in order to achieve the transcription of a small part of the 16S rRNA gene of Geobacillus kaustophilus. This part behaves as a trigger sequence that will activate the Toehold switch 13 (BBa_K2973011).

Source

Geobacillus kaustophilus strain BGSC 90A1 16S ribosomal RNA, complete sequence

NCBI Reference Sequence: NR_115285.2

References

Pardee, Keith, et al. “Rapid, Low-Cost Detection of Zika Virus Using Programmable Biomolecular Components.” Cell, vol. 165, no. 5, 2016, pp. 1255–1266., doi:10.1016/j.cell.2016.04.059.

Green, Alexander A., et al. “Toehold Switches: De-Novo-Designed Regulators of Gene Expression.” Cell, vol. 159, no. 4, 2014, pp. 925–939., doi:10.1016/j.cell.2014.10.002.

J. N. Zadeh, C. D. Steenberg, J. S. Bois, B. R. Wolfe, M. B. Pierce, A. R. Khan, R. M. Dirks, N. A. Pierce. NUPACK: analysis and design of nucleic acid systems. J Comput Chem, 32:170–173, 2011.

http://www.nupack.org