Difference between revisions of "Part:BBa K2983022"

Line 18: Line 18:
 
Blue circle : overhang formed by SapI after cutting (ATG)
 
Blue circle : overhang formed by SapI after cutting (ATG)
  
Red circle: overhang formed by BasI  after cutting (AATG)
+
Orange circle: overhang formed by BasI  after cutting (AATG)
  
  

Revision as of 14:04, 19 October 2019


Loop C-Alpha

This part is a Loop Type IIS Golden gate adapter that contains a BsaI and a SapI restriction sites.

Usage and Biology

The Loop Type IIS cloning sites (triangles in figure 1) are a combination of BsaI and SapI restriction sites each with different cutting sites that generate well defined overhangs (circles in Figure 1).The sequence of the loop C-Alpha is as fellow : GGTCTCAAATGAATGTGAAGAGC

Figure 1:Loop C-Alpha structure


Blue triangle: SapI fixation site (GCTCTTC)

Red triangle : BsaI fixation site (GAGACC)

Blue circle : overhang formed by SapI after cutting (ATG)

Orange circle: overhang formed by BasI after cutting (AATG)



Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1
    Illegal SapI.rc site found at 17