Difference between revisions of "Part:BBa K2980009"
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To achieve the response to light stimulation, light-sensitive proteins, CIB1([[Part:BBa K2980002]]) and cry2([[Part:BBa K2980000]]), are fused to our phase separation elements and application elements, respectively. When exposed to 488nm laser, CIB1 and cry2 will bind to each other. Since CIB1 is primarily amplified in the compartment formed by phase separation elements (BBa K2980009), cry2 would be recruited to phase, as the switch turns on. Therefore, the distribution of enzyme or other proteins fused to cry2 would be altered by light stimulation. (Figure 1A,1B)
 
To achieve the response to light stimulation, light-sensitive proteins, CIB1([[Part:BBa K2980002]]) and cry2([[Part:BBa K2980000]]), are fused to our phase separation elements and application elements, respectively. When exposed to 488nm laser, CIB1 and cry2 will bind to each other. Since CIB1 is primarily amplified in the compartment formed by phase separation elements (BBa K2980009), cry2 would be recruited to phase, as the switch turns on. Therefore, the distribution of enzyme or other proteins fused to cry2 would be altered by light stimulation. (Figure 1A,1B)
  
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[[File:Figure 1A.png|200px|thumb|left|alt text]]
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[[File:Figure_1A.png|200px|thumb|left|alt text]]
  
 
E. coli transformed with CIB1-GCN(4)-GFP-FUS(BBa K2980009) and cry2-mcherry(BBa K2980006) are placed under confocal microscope. Only mcherry channel and TD channel are shown in the video below (figure 2A), since 488 nm laser, which is used to stimulate GFP, can also lead to bound of CIB1 and cry2. At 0 second, cry2-mcherry is almost smear in the cell. (Figure 2B) Yet, after stimulation, it is recruited to the ends of the cell and form two sphere-like droplets. The screen shots below show the distribution of mcherry before and after 488 nm laser stimulation. (Figure 2C) In order to reflect the recruitment of cry2-mcherry into phase, we use the ratio of light intensity in phase to the rest of the cell as a standard. (Figure 2D) As presented in the plot, this ratio quickly increases after stimulation and can stay at a rather static level for a long time. (Figure 2E)
 
E. coli transformed with CIB1-GCN(4)-GFP-FUS(BBa K2980009) and cry2-mcherry(BBa K2980006) are placed under confocal microscope. Only mcherry channel and TD channel are shown in the video below (figure 2A), since 488 nm laser, which is used to stimulate GFP, can also lead to bound of CIB1 and cry2. At 0 second, cry2-mcherry is almost smear in the cell. (Figure 2B) Yet, after stimulation, it is recruited to the ends of the cell and form two sphere-like droplets. The screen shots below show the distribution of mcherry before and after 488 nm laser stimulation. (Figure 2C) In order to reflect the recruitment of cry2-mcherry into phase, we use the ratio of light intensity in phase to the rest of the cell as a standard. (Figure 2D) As presented in the plot, this ratio quickly increases after stimulation and can stay at a rather static level for a long time. (Figure 2E)

Revision as of 17:18, 15 October 2019


CIB1-GCN(4)-mEGFP-FUSLCD

The fusion protein can induce consistant phase-separation in cell once well expressed. Under blue light stimulation, cry2-mcherry (Part:BBa K2980006) will be recruited into its phase.

Light stimulation

To achieve the response to light stimulation, light-sensitive proteins, CIB1(Part:BBa K2980002) and cry2(Part:BBa K2980000), are fused to our phase separation elements and application elements, respectively. When exposed to 488nm laser, CIB1 and cry2 will bind to each other. Since CIB1 is primarily amplified in the compartment formed by phase separation elements (BBa K2980009), cry2 would be recruited to phase, as the switch turns on. Therefore, the distribution of enzyme or other proteins fused to cry2 would be altered by light stimulation. (Figure 1A,1B)

alt text

E. coli transformed with CIB1-GCN(4)-GFP-FUS(BBa K2980009) and cry2-mcherry(BBa K2980006) are placed under confocal microscope. Only mcherry channel and TD channel are shown in the video below (figure 2A), since 488 nm laser, which is used to stimulate GFP, can also lead to bound of CIB1 and cry2. At 0 second, cry2-mcherry is almost smear in the cell. (Figure 2B) Yet, after stimulation, it is recruited to the ends of the cell and form two sphere-like droplets. The screen shots below show the distribution of mcherry before and after 488 nm laser stimulation. (Figure 2C) In order to reflect the recruitment of cry2-mcherry into phase, we use the ratio of light intensity in phase to the rest of the cell as a standard. (Figure 2D) As presented in the plot, this ratio quickly increases after stimulation and can stay at a rather static level for a long time. (Figure 2E)

What is more, we validated the ability of reversible manner of our switch. Since bacteria on a single slide cannot be observed for a long time, we acquired sample from a culture dish at different time point. After incubated bacteria in dark for a few hours, we got the first sample, which shows smear distribution in the cell. (Figure 3A) Then, we exposed the whole dish to 488 nm laser for about 20 seconds. Immediately after that, we acquired another sample, with cry2-mcherry aggregates at the end of the cell. (Figure 3B) After that, the dish was placed in dark again for half an hour. Next, another sample was acquired, in which cry2-mcherry reversed to smear state. Finally, we tried to turn on the switch again, which worked as well as previous attempts.

Usage and Biology

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 112
  • 1000
    COMPATIBLE WITH RFC[1000]