Difference between revisions of "Part:BBa K2967012"

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<font size="5" >Figure 1. The composition of tunable biological amplifier.</font>Transcription input can be amplified through the amplifier.
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'''Figure 1. The composition of tunable biological amplifier.''' Transcription input can be amplified through the amplifier.
  
In order to reduce the impact of colonization of exotic microorganisms in the intestine and to accelerate the secretion of IL-10 and myrosinase&#65292; we found a gain-tunable transcription amplifier in Pseudomonas syringae to tunable amplifier the NO signal.
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In order to reduce the impact of colonization of exotic microorganisms in the intestine and to accelerate the secretion of ''IL-10'' and ''myrosinase'', we found a gain-tunable transcription amplifier in ''Pseudomonas syringae'' to tunable amplifier the NO signal.
  
 
To verify the fixed-gain amplification(Fig. 2) capability, we integrated the T7 promoter as the nitric oxide responsive transcriptional sensor to the input of the fixed-gain amplifier with GFP as the output. When the transduced transcriptional input from the T7 promoter was connected to our amplifier, the resulting output signal amplitude and dynamic range increased significantly as well as the response sensitivity to the inducer (Fig 3.).
 
To verify the fixed-gain amplification(Fig. 2) capability, we integrated the T7 promoter as the nitric oxide responsive transcriptional sensor to the input of the fixed-gain amplifier with GFP as the output. When the transduced transcriptional input from the T7 promoter was connected to our amplifier, the resulting output signal amplitude and dynamic range increased significantly as well as the response sensitivity to the inducer (Fig 3.).
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https://static.igem.org/mediawiki/parts/thumb/0/02/T--NEU_China--part-amplifier-2.png/800px-T--NEU_China--part-amplifier-2.png
  
Figure 2. Diagram for fixed-gain amplifier in pCDFDuet-1 plasmid. T7 promoter, the gene downstream of this promoter will be transcribed when there is T7 RNA polymerase. lacO, the sequence represses the nearby promoter when there is no inducer (e.g. IPTG). RBS, ribosome binding site. hrpR and hrpS are activator proteins. PhrpL, a promoter which can be induced by the ultrasensitive high-order co-complex hrpRS. GFP, green fluorescent protein.
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'''Figure 2. Diagram for fixed-gain amplifier in pCDFDuet-1 plasmid.''' T7 promoter, the gene downstream of this promoter will be transcribed when there is T7 RNA polymerase. ''lacO'', the sequence represses the nearby promoter when there is NO inducer (e.g. IPTG). RBS, ribosome binding site. ''hrpR'' and ''hrpS'' are activator proteins. P''<sub>hrpL</sub>'', a promoter which can be induced by the ultrasensitive high-order co-complex ''hrpRS''. GFP, green fluorescent protein.
  
 
https://static.igem.org/mediawiki/parts/thumb/e/ed/T--NEU_China--part-amplifier-f4h.png/800px-T--NEU_China--part-amplifier-f4h.png
 
https://static.igem.org/mediawiki/parts/thumb/e/ed/T--NEU_China--part-amplifier-f4h.png/800px-T--NEU_China--part-amplifier-f4h.png
 
https://static.igem.org/mediawiki/parts/thumb/c/c5/T--NEU_China--part-amplifier-f6h.png/800px-T--NEU_China--part-amplifier-f6h.png
 
https://static.igem.org/mediawiki/parts/thumb/c/c5/T--NEU_China--part-amplifier-f6h.png/800px-T--NEU_China--part-amplifier-f6h.png
  
Figure 3. Responses of the GFP without fixed-gain amplification (V-GFP) and with fixed-gain amplification (V-AM). The cells are induced by 5 varying concentrations of IPTG (0, 10*-6 M, 10*-5 M, 10*-4 M, 10*-3 M) after 4 and 6 hours (A, 4h; B, 6h).
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'''Figure 3. Responses of the GFP without fixed-gain amplification (V-GFP) and with fixed-gain amplification (V-AM).''' The cells are induced by 5 varying concentrations of IPTG (0, 10<sup>-6</sup> M, 10<sup>-5</sup> M, 10<sup>-4</sup> M, 10<sup>-3</sup> M) after 4 and 6 hours (A, 4h; B, 6h).
  
Amplifier and GFP are cloned on pcdfDuet-1 vectors which are called V-AM and V-GFP. Then empty plasmid (VE), VE-GFP and VE-AM are transformed into E. coli BL-21, and single colonies are added to 5 ml LB medium for overnight incubation at 37 degrees Celsius. Using 1 ml PBS to wash the bacteria and measuring the value of OD600 to obtain cell concentration of each culture medium. The bacterial culture medium was diluted to OD600=0.025 with LBS (LB with streptomycin) and then added to black 96-well plate. Isopropyl-beta-D-thiogalactopyranoside (IPTG) with concentration of 0, 1*10-3, 1*10-4, 1*10-5 and 1*10-6 was added to induce those bacteria. After incubation for 4 hours and 6hours, the data were detected by enzyme labeling instrument. The excitation wavelength is 485 nm and the absorption wavelength is 525 nm.
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Amplifier and GFP are cloned on pcdfDuet-1 vectors which are called V-AM and V-GFP. Then empty plasmid (VE), VE-GFP and VE-AM are transformed into ''E. coli'' ''BL-21'', and single colonies are added to 5 ml LB medium for overnight incubation at 37 degrees Celsius. Using 1 ml PBS to wash the bacteria and measuring the value of OD<sub>600</sub> to obtain cell concentration of each culture medium. The bacterial culture medium was diluted to OD<sub>600</sub>=0.025 with LBS (LB with streptomycin) and then added to black 96-well plate. Isopropyl-beta-D-thiogalactopyranoside (IPTG) with concentration of 0, 10<sup>-6</sup> M, 10<sup>-5</sup> M, 10<sup>-4</sup> M and 10<sup>-3</sup> M was added to induce those bacteria. After incubation for 4 hours and 6hours, the data were detected by enzyme labeling instrument. The excitation wavelength is 485 nm and the absorption wavelength is 525 nm.
  
In conclusion, the amplifier achieves the desired effect, and the amplification gain is about 2.0. Comparing other amplifiers, this value is still low. In addition, we find that the gene expression process is accelerated with the amplifier,the report GFP usually reaching its saturation value after about 4 hours' inducion.
+
In conclusion, the amplifier achieves the desired effect, and the amplification gain is about 2.0. Comparing other amplifiers, this value is still low. In addition, we find that the gene expression process is accelerated with the amplifier, the report GFP usually reaching its saturation value after about 4 hours' induction.
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 03:28, 2 October 2019


The fixed-gain bio-amplifier

The tunable biological amplifier (Fig. 1) comprises three modular terminals--the input, the output and a gain-tuning input. The device can continuously process the input transcriptional signal with an externally tunable gain (the amplification ratio of the changes in output to input) control.[1]

800px-T--NEU_China--part--amplifier-1.png

Figure 1. The composition of tunable biological amplifier. Transcription input can be amplified through the amplifier.

In order to reduce the impact of colonization of exotic microorganisms in the intestine and to accelerate the secretion of IL-10 and myrosinase, we found a gain-tunable transcription amplifier in Pseudomonas syringae to tunable amplifier the NO signal.

To verify the fixed-gain amplification(Fig. 2) capability, we integrated the T7 promoter as the nitric oxide responsive transcriptional sensor to the input of the fixed-gain amplifier with GFP as the output. When the transduced transcriptional input from the T7 promoter was connected to our amplifier, the resulting output signal amplitude and dynamic range increased significantly as well as the response sensitivity to the inducer (Fig 3.).

800px-T--NEU_China--part-amplifier-2.png

Figure 2. Diagram for fixed-gain amplifier in pCDFDuet-1 plasmid. T7 promoter, the gene downstream of this promoter will be transcribed when there is T7 RNA polymerase. lacO, the sequence represses the nearby promoter when there is NO inducer (e.g. IPTG). RBS, ribosome binding site. hrpR and hrpS are activator proteins. PhrpL, a promoter which can be induced by the ultrasensitive high-order co-complex hrpRS. GFP, green fluorescent protein.

800px-T--NEU_China--part-amplifier-f4h.png 800px-T--NEU_China--part-amplifier-f6h.png

Figure 3. Responses of the GFP without fixed-gain amplification (V-GFP) and with fixed-gain amplification (V-AM). The cells are induced by 5 varying concentrations of IPTG (0, 10-6 M, 10-5 M, 10-4 M, 10-3 M) after 4 and 6 hours (A, 4h; B, 6h).

Amplifier and GFP are cloned on pcdfDuet-1 vectors which are called V-AM and V-GFP. Then empty plasmid (VE), VE-GFP and VE-AM are transformed into E. coli BL-21, and single colonies are added to 5 ml LB medium for overnight incubation at 37 degrees Celsius. Using 1 ml PBS to wash the bacteria and measuring the value of OD600 to obtain cell concentration of each culture medium. The bacterial culture medium was diluted to OD600=0.025 with LBS (LB with streptomycin) and then added to black 96-well plate. Isopropyl-beta-D-thiogalactopyranoside (IPTG) with concentration of 0, 10-6 M, 10-5 M, 10-4 M and 10-3 M was added to induce those bacteria. After incubation for 4 hours and 6hours, the data were detected by enzyme labeling instrument. The excitation wavelength is 485 nm and the absorption wavelength is 525 nm.

In conclusion, the amplifier achieves the desired effect, and the amplification gain is about 2.0. Comparing other amplifiers, this value is still low. In addition, we find that the gene expression process is accelerated with the amplifier, the report GFP usually reaching its saturation value after about 4 hours' induction.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 2102
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1312
    Illegal BsaI.rc site found at 3047
    Illegal SapI.rc site found at 1945