Difference between revisions of "Part:BBa K2729002"
 
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<partinfo>BBa_K2729002 short</partinfo>
 
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Flavivirus capsid (C) is a structural protein responsible for gathering the viral RNA into a nucleocapsid that forms the core of a mature virus particle.
 
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===Usage and Biology===
 
===Usage and Biology===
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Flavivirus capsid (C) is a structural protein responsible for gathering the viral RNA into a nucleocapsid that forms the core of a mature virus particle.
  
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Mature DENV capsid is a highly basic protein of 12 kDa that forms homodimers in solution with affinity for both nucleic acids and lipid membranes. The 100-residue monomer contains 26 basic amino acids and only 3 acidic residues.
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<span class='h3bb'>Sequence and Features</span>
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===Characterization===
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The sequence is derived from native dengue virus and optimized for <i>Homo Sapiens</i> using IDT Codon Optimization Tool. Our team checked the sequence length of synthesized oligo DNA and characterized it.
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[[File:Tokyotech electrophoresis.png|thumb|left|300px| '''Figure 1:''' '''Result of the Electrophoresis (Marker: lambda HindIII)'''  ]]
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<br>
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As shown in Figure 1, the band of DENV3 C come around 300 bp.
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<br style="clear: both" />
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===Analysis===
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Our team successfully validated that the sequence of DENV1 C was synthesized, and obtained enough amount of it for transfection.
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If it works well in the process of pseudo-virus production and also infection into host cells as expected, the fluorescence intensity can be observed robustly.
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===Sequence and Features===
 
<partinfo>BBa_K2729002 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K2729002 SequenceAndFeatures</partinfo>
  
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===Reference===
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- [https://www.ncbi.nlm.nih.gov/gene/507572 NCBI Gene Database]
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- [https://www.ncbi.nlm.nih.gov/pubmed/?term=Properties+and+Functions+of+the+Dengue+Virus+Capsid+Protein Properties and Functions of the Dengue Virus Capsid Protein.]
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===Functional Parameters===
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<partinfo>BBa_K2729002 parameters</partinfo>
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Latest revision as of 03:29, 18 October 2018


DENV3 C (Capsid Protein | Dengue Virus Serotype Ⅲ)

Usage and Biology

Flavivirus capsid (C) is a structural protein responsible for gathering the viral RNA into a nucleocapsid that forms the core of a mature virus particle.

Mature DENV capsid is a highly basic protein of 12 kDa that forms homodimers in solution with affinity for both nucleic acids and lipid membranes. The 100-residue monomer contains 26 basic amino acids and only 3 acidic residues.

Characterization

The sequence is derived from native dengue virus and optimized for Homo Sapiens using IDT Codon Optimization Tool. Our team checked the sequence length of synthesized oligo DNA and characterized it.

Figure 1: Result of the Electrophoresis (Marker: lambda HindIII)


As shown in Figure 1, the band of DENV3 C come around 300 bp.

Analysis

Our team successfully validated that the sequence of DENV1 C was synthesized, and obtained enough amount of it for transfection.

If it works well in the process of pseudo-virus production and also infection into host cells as expected, the fluorescence intensity can be observed robustly.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 187
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 219

Reference

- NCBI Gene Database

- Properties and Functions of the Dengue Virus Capsid Protein.