Difference between revisions of "Part:BBa K2871000"
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Revision as of 19:07, 17 October 2018
Map20, T3SS export signal peptide from Map gene
Map20 is a signal sequence encoding a 20 amino acid long signal peptide derived from the map gene from the Enteropathogenic E. coli strain E22. It is used as an N-terminal tag for a protein to be translocated by the E. coli type-3-secretion system (T3SS). This T3SS signal tag is described by Charpentier & Oswald (2004) to be sufficient to target proteins to E. coli type III secretion pathway. Its short length seemed to be attractive to us because we wanted to minimize folding interference between the signal sequence and the intended protein fused to the signal sequence.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 85
- 1000COMPATIBLE WITH RFC[1000]
Experimental characterization
Map20-fusion protein expression plasmid construction
In order to be able to test the expression of N-terminal Map20-fusion protein, we constructed a plasmid consisting of a Map20-tagged reporter gene controlled by pBAD promoter, which can be activated by adding arabinose to the culture media. The Map20 T3SS signal is linked with the reporter protein by glycine-serine linker peptide to decrease folding interference. 6X-His tag has been added to the C-terminal to serve as an epitope tag for western blot. The plasmid map is shown in Figure 1.
Figure 1: Map20-mCherry expression plasmid.
To evaluate the function of CesF and CesT effector chaperone in the injectisome-dependent secretion of the fusion protein, the CesF-CesT chaperone cassette was inserted next to araC gene under a constitutive promoter pCAT as shown in Figure 2.
Figure 2: Map20-mCherry expression plasmid with CesF-CesT chaperone cassette.
Detection of signal peptide-dependent secretion without membrane
To create an E. coli strain with a different combination of injectisome, signal, reporter, and chaperone. The reporter plasmids with and without chaperone cassette were transformed into SIEC E. coli strain which express injectisome, and SIECΔP1 strain which doesn’t have injectisome. The E. coli strains with reporter plasmid were cultured in LB media overnight at 37 C. Reporter protein and injectisome expression was induced by adding 1% L-arabinose and 0.1mM IPTG respectively. The induced cultures were incubated at 16 C with 180 rpm shaking for 6 days. We collected 1 ml of sample from the induced culture every 24 hours and separate cell and supernatant by centrifugation. Cellular fraction were lysed by sonication and separated into soluble and insoluble parts by centrifugation. The supernatants, cellular soluble parts, and cellular insoluble parts from day 0, 3, and 6 were gel electrophoresis on 12% SDS-polyacrylamide gel (SDS-PAGE). The reporter protein was detected western blot with anti-his tag antibody. The constructs tested all contained the reporter protein, being mCherry or ꞵ-lactamase.
Result
Map20-mCherry fusion protein expressing E. coli lack visible mCherry colour characteristic
Visual observation of E. coli cell pellet on day 6 shows a difference in color between E. coli that express mCherry and Map20-mCherry fusion protein. The mCherry-expressing E. coli pellet (tube no. 4 and 6) has pink color while Map20-mCherry fusion protein-expressing E. coli pellet (tube no. 1, 2, 3 and 5) has pale white-yellowish color as shown in Figure 3. This observation suggests that Map20 signal might decrease mCherry reporter protein expression or interferes with its folding.
Figure 3 Visual observation of different E. coli strains after 6 days of incubation in 16 ℃
Map20-mCherry fusion protein is expressed and present in both soluble and insoluble part of E. coli cell.
The SDS-PAGE(Figure 4) and Western blot(Figure 5) result shows that our mCherry reporter proteins with and without Map20 are present in both cellular soluble and insoluble part which confirm its expression in SIEC and SIECΔP1 E. coli cell. However, the expression level of mCherry with Map20 signal is significantly lower than normal mCherry. This data suggest that N-terminal Map20 signal might decrease translation rate or decrease stability of its fusion protein.
Figure 4: SDS-PAGE of cellular insoluble protein. M1: Stained ladder, M2: Unstained ladder (UV visible), D0: Day 0, D3: Day 3, D6: Day 6. I+/-: With/without injectisome, S+/-: With/without signal, C+/-: With/without chaperones.
Figure 5: Western blot of cellular insoluble protein. mCherry bands are present in day 3 and day 6 of all groups that use mCherry as a reporter. Bands corresponding to mCherry protein are present in day 3 and day 6 of almost all groups that use mCherry as a reporter. Note that the beta-lactamase does not get a band. M1: Stained ladder, M2: Unstained ladder (UV visible), D0: Day 0, D3: Day 3, D6: Day 6. I+/-: With/without injectisome, S+/-: With/without signal, C+/-: With/without chaperones.
Figure 6: SDS-PAGE of cellular soluble protein. In lanes 8/9 and 16/17 an mCherry bands is readily visible as a prominent band, which indicate high expression level. The other lanes show no distinguishable bands for mCherry tagged with Map20. M1: Stained ladder, M2: Unstained ladder (UV visible), D0: Day 0, D3: Day 3, D6: Day 6. I+/-: With/without injectisome, S+/-: With/without signal, C+/-: With/without chaperones.
Figure 7.a: Western blot of cellular soluble protein. mCherry bands are present in day 3 and day 6 of all groups that use mCherry as a reporter. Note that the beta-lactamase does not get a band. M1: Stained ladder, M2: Unstained ladder (UV visible), D0: Day 0, D3: Day 3, D6: Day 6. I+/-: With/without injectisome, S+/-: With/without signal, C+/-: With/without chaperones.
Figure 7.b: Western blot of cellular soluble protein. mCherry bands are present in day 3 and day 6 of all groups that use mCherry as a reporter. Note: The shown sample was run on another gel than the rest of the samples from Figure 7.a
Figure 8: SDS-PAGE of supernatant with no distinguishable lanes other than identifiable markers M1 and M2. The signal Map20 does not cause the Map20+mCherry to be secreted through the membrane and into the media - The signal does not cause the injectisome to "leak".
Figure 9: Western blot with anti-his tag antibody of supernatant.
Figure 10: Bacteria expressing Map20+mCherry visualized in a fluorescence confocal microscope. As seen in the lower left square, fluorescence is seen from the bacteria. The upper right square shows the bright field view with bacteria. Note, no fluorescence is seen in the lower left square (fluorescence from GFP). The results show that the Map20 signal+mCherry reporter protein is fluorescent and doesn't misfold enough to lose fluorescence because of the signal sequence.
Figure 11: Bacteria expressing Map20+GFP visualized in a fluorescence confocal microscope. As seen in the lower left square, fluorescence is seen from the bacteria. The upper right square shows the bright field view with bacteria. Note, no fluorescence is seen in the lower right square (fluorescence from mCherry). Again the results show that the Map20 signal+GFP reporter protein is fluorescent and doesn't misfold enough to lose fluorescence because of the signal sequence.
Conclusion
Map20-tagged mCherry is expressed in lower amount compared to mCherry without tag. No protein secretion is detected in the supernatanting that the Map20 signal does not cause the tagged Map20+mCherry to be secreted into the media without membrane attachment. Figure 10 and 11 shows fluorescent reporter proteins tagged with the Map20 secretion signal, which indicates that the fusionprotein folds correctly.