Difference between revisions of "Part:BBa K2617000"

(→‎Enzyme activity)
(→‎Detection of ferulic acid)
 
(12 intermediate revisions by the same user not shown)
Line 3: Line 3:
 
<partinfo>BBa_K2617000 short</partinfo>
 
<partinfo>BBa_K2617000 short</partinfo>
  
−
Xyn1D-fae1A cuts off the crosslinking between polysaccharides and lignin in cell wall and degrade xylose hemicellulose. This part is responsible for pretreatment of straw.
+
Xyn10D-fae1A is a bifunctional enzyme, which has the activity of ferulic esterase and xylanase. Feruloyl esterase can hydrolyze ferulic acid ester groups, which are responsible for attaching in complex cellular cell wall structures. Xylanase can hydrolyze plant cell wall component xylan. This part is responsible for pretreatment of straw.
  
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here
Line 16: Line 16:
 
===Molecular weight===
 
===Molecular weight===
  
−
This halohydrin dehalogenase gene codes for a protein of 726 amino acids with a molecular mass of 82.3 kDa.
+
This gene codes for a protein of 726 amino acids with a molecular mass of 82.3 kDa.
 +
 
 +
===Detection of ferulic acid===
 +
To detect the expression of Xyn10D-Fae1A gene(piGEM2018-Module001), we converted carrying Xyn10D-Fae1A gene to co-culture with straw culture medium. Gas chromatography was used to detect ferulic acid [1]. The ferulic acid production was monitored by periodically taking samples from the fermentation liquid of E. coli BL21(DE3) carrying Xyn10D-Fae1A gene.
 +
GC results showed that the peak of ferulic acid was appeared after fermentation for 24h with the strain carrying Xyn10D-Fae1A gene, while no ferulic acid was detected in the sample of E. coli BL21(DE3) without vector (Fig. 1).
 +
[[File:T--UESTC-China--detection of ferulic acid.png|500px|thumb|center|'''Fig. 1''' The production of ferulic acid determined using GC. The supernatants of fermented liquid of E. coli BL21(DE3) with or without Xyn10D-Fae1A gene were used for the determination of ferulic acid, respectively. Samples were taken from reaction mixtureat 0h, 24h.]]
 +
The ferulic acid peak was further analyzed by using GC-MS (Fig. 2).
 +
[[File:T--UESTC-China--GC-MS.png|500px|thumb|center|'''Fig. 2''' Mass spectrums of ferulic acid derivative. Sample was the supernatants of E. coli BL21(DE3) carrying Xyn10D-Fae1A gene after fermentation for 24h.]]
  
 
===Enzyme activity of xylanase===
 
===Enzyme activity of xylanase===
 +
Xylanase can decompose xylan to xylose. Comparing with wild type,our E. coli carrying Xyn10D-Fae1A gene take effect [2] (Fig. 3).
  
  
−
[[File:T--UESTC-China-standard curve of xylose .png|500px|thumb|center|'''Fig. 1''' Standard Curve of Xylose. Data were measured in phosphate buffer solution at pH 6.0 and 40℃.]]
 
  
−
[[File:T--UESTC-China-xylanase activity.png|500px|thumb|center|'''Fig. 2''' Xylanase Activity on Xylan. Data were measured inphosphate buffer solution at pH 6.0 and 40℃.]]
+
[[File:T--UESTC-China-xylanase activity.png|500px|thumb|center|'''Fig. 3''' Xylanase Activity on Xylan. Data were measured inphosphate buffer solution at pH 6.0 and 40℃.]]
  
−
===Enzyme activity of xylanase===
+
===Enzyme activity of ferulic acid esterase===
−
Ferulic acid esterase can decompose ferulic acid p-nitrophenol ester to produce p-nitrophenol and ferulic acid.  
+
Ferulic acid esterase can decompose 4-nitrophenyl trans-ferulate to produce p-nitrophenol and ferulic acid. We used crude extract fraction of strain to detect enzyme activity [3].
−
The strain BL21 (DE3) transformed with piGEM2018-Module001 was cultivated overnight and centrifuged to obtain the supernatant. The remaining bacteria were broken and broken products were obtained. DSMO solution of ferulic acid p-nitrophenol ester was added to phosphate buffer solution of 630 L pH=6.4 with a concentration of 400 L of 10 mmol/L. Heat preservation 5min at 40℃ and add 0.2ml sample solution. The initial OD values were measured before incubation. Gently mix and incubate 4h at 40 C, determine the final OD value and compare the difference.
+
[[File:T--UESTC-China--Enzyme Activity of Ferulic acid esterase.png|500px|thumb|center|'''Fig. 4''' Enzyme Activity of Ferulic acid esterase. Data were measured in phosphate buffer solution at pH 6.4 and 40℃.]]
−
[[File:T--UESTC-China--Enzyme Activity of Ferulic acid esterase.png|500px|thumb|center|'''Fig. 3''' Enzyme Activity of Ferulic acid esterase. Data were measured in phosphate buffer solution at pH 6.4 and 40℃.]]
+
 
 +
The results (Fig. 4) showed that the ferulic acid enzyme activity of our strain was much higher than that of the wild type.
 +
 
 +
===References===
 +
[1] Qiu-Yi, L. I., Gan, G. P., Wang, G. Z., & Liu, Y. W. (2007). Determination of ferulic acid in ligusticum chuanxiong hort. oil by gc. Lishizhen Medicine & Materia Medica Research.
  
 +
[2] Shen C, Li R, Hu T & Yan K. 2011. Determination of xylanase activity with DNS method. Dyeing & Finishing, 2: 35-39.
  
 +
[3] Zhang S, Pei X & Wu Z. 2009. Cloning and expression of feruloyl esterase A from Aspergillus niger, and establishment of fast activity detection methods. Chinese Journal of Applied & Environmental Biology, 2: 276-279.
 
<!-- Uncomment this to enable Functional Parameter display  
 
<!-- Uncomment this to enable Functional Parameter display  
 
===Functional Parameters===
 
===Functional Parameters===
 
<partinfo>BBa_K2617000 parameters</partinfo>
 
<partinfo>BBa_K2617000 parameters</partinfo>
 
<!-- -->
 
<!-- -->

Latest revision as of 11:09, 17 October 2018


Xyn10D-Fae1A：Bifunctional xylanase/ferulic acid esterase

Xyn10D-fae1A is a bifunctional enzyme, which has the activity of ferulic esterase and xylanase. Feruloyl esterase can hydrolyze ferulic acid ester groups, which are responsible for attaching in complex cellular cell wall structures. Xylanase can hydrolyze plant cell wall component xylan. This part is responsible for pretreatment of straw.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 534
    Illegal AgeI site found at 381
    Illegal AgeI site found at 628
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 1236

Characterization

Molecular weight

This gene codes for a protein of 726 amino acids with a molecular mass of 82.3 kDa.

Detection of ferulic acid

To detect the expression of Xyn10D-Fae1A gene(piGEM2018-Module001), we converted carrying Xyn10D-Fae1A gene to co-culture with straw culture medium. Gas chromatography was used to detect ferulic acid [1]. The ferulic acid production was monitored by periodically taking samples from the fermentation liquid of E. coli BL21(DE3) carrying Xyn10D-Fae1A gene. GC results showed that the peak of ferulic acid was appeared after fermentation for 24h with the strain carrying Xyn10D-Fae1A gene, while no ferulic acid was detected in the sample of E. coli BL21(DE3) without vector (Fig. 1).

Fig. 1 The production of ferulic acid determined using GC. The supernatants of fermented liquid of E. coli BL21(DE3) with or without Xyn10D-Fae1A gene were used for the determination of ferulic acid, respectively. Samples were taken from reaction mixtureat 0h, 24h.

The ferulic acid peak was further analyzed by using GC-MS (Fig. 2).

Fig. 2 Mass spectrums of ferulic acid derivative. Sample was the supernatants of E. coli BL21(DE3) carrying Xyn10D-Fae1A gene after fermentation for 24h.

Enzyme activity of xylanase

Xylanase can decompose xylan to xylose. Comparing with wild type,our E. coli carrying Xyn10D-Fae1A gene take effect [2] (Fig. 3).


Fig. 3 Xylanase Activity on Xylan. Data were measured inphosphate buffer solution at pH 6.0 and 40℃.

Enzyme activity of ferulic acid esterase

Ferulic acid esterase can decompose 4-nitrophenyl trans-ferulate to produce p-nitrophenol and ferulic acid. We used crude extract fraction of strain to detect enzyme activity [3].

Fig. 4 Enzyme Activity of Ferulic acid esterase. Data were measured in phosphate buffer solution at pH 6.4 and 40℃.

The results (Fig. 4) showed that the ferulic acid enzyme activity of our strain was much higher than that of the wild type.

References

[1] Qiu-Yi, L. I., Gan, G. P., Wang, G. Z., & Liu, Y. W. (2007). Determination of ferulic acid in ligusticum chuanxiong hort. oil by gc. Lishizhen Medicine & Materia Medica Research.

[2] Shen C, Li R, Hu T & Yan K. 2011. Determination of xylanase activity with DNS method. Dyeing & Finishing, 2: 35-39.

[3] Zhang S, Pei X & Wu Z. 2009. Cloning and expression of feruloyl esterase A from Aspergillus niger, and establishment of fast activity detection methods. Chinese Journal of Applied & Environmental Biology, 2: 276-279.