Difference between revisions of "Part:BBa K2570002"
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<partinfo>BBa_K2570002 short</partinfo> | <partinfo>BBa_K2570002 short</partinfo> | ||
− | Phenyllactic acid(PLA)is widely found in kimchi, honey and other foods. It is a new type of natural antibacterial substance and preservative, which can inhibit a series of gram-negative, gram-positive bacteria and fungi. There are two isomers of phenyllactic acid, and D-phenyllactic acid (D-PLA) has higher antibacterial activity. In addition, D-PLA has obvious improvement in protection of the cardiovascular system and has been widely used in the food and pharmaceutical industries. In order to enhance the production of D-PLA, we expressed D-lactate dehydrogenase | + | Phenyllactic acid(PLA)is widely found in kimchi, honey and other foods. It is a new type of natural antibacterial substance and preservative, which can inhibit a series of gram-negative, gram-positive bacteria and fungi. There are two isomers of phenyllactic acid, and D-phenyllactic acid (D-PLA) has higher antibacterial activity. In addition, D-PLA has obvious improvement in protection of the cardiovascular system and has been widely used in the food and pharmaceutical industries. In order to enhance the production of D-PLA, we expressed D-lactate dehydrogenase [https://parts.igem.org/wiki/index.php?title=Part:BBa_K2570012 BBa_K2570012], phenylalanine aminotransferase[https://parts.igem.org/wiki/index.php?title=Part:BBa_K2570002 BBa_K2570002] and''rocG'' [https://parts.igem.org/wiki/index.php?title=Part:BBa_K2570013 BBa_K2570013] which is used to introduce the cofactor circulatory system and optimize the transformation system conditions to express D-PLA effectively with the phenylalanine as a substrate. |
[[File:T--FJNU-China--PLA_circulation.png|600px|thumb|center|Fig.1 Schematic diagram and equation of D-PLA production by introducing a self-sufficient system.]] | [[File:T--FJNU-China--PLA_circulation.png|600px|thumb|center|Fig.1 Schematic diagram and equation of D-PLA production by introducing a self-sufficient system.]] | ||
− | This sequence encodes for Phenylalanine aminotransferase Tyrb that is one of the two key enzymes in the anabolic pathway of phenyllactic acid biosynthesis. Phenylalanine aminotransferase (PheATs), also known as aromatic transaminase (AroATs) or tyrosine aminotransferase (TyrATs), is the key enzyme responsible for formation of the compound pyridoxa-l-5'-phosphate (PLP), and is also essential for the biosynthesis of phenylalanine and tyrosinase. We used phenylalanine transaminase from Escherichia coli 21B to deaminate the substrate phenylalanine combined with aminotransferase to produce phenylpyruvic acid that is the raw material of the target product D-PLA. | + | This sequence encodes for Phenylalanine aminotransferase Tyrb that is one of the two key enzymes in the anabolic pathway of phenyllactic acid biosynthesis. Phenylalanine aminotransferase (PheATs), also known as aromatic transaminase (AroATs) or tyrosine aminotransferase (TyrATs), is the key enzyme responsible for formation of the compound pyridoxa-l-5'-phosphate (PLP), and is also essential for the biosynthesis of phenylalanine and tyrosinase. We used phenylalanine transaminase from ''Escherichia coli 21B'' to deaminate the substrate phenylalanine combined with aminotransferase to produce phenylpyruvic acid that is the raw material of the target product D-PLA. |
− | Our project uses phenylalanine aminotransferase (PheATs) to catalyze the substrate phenylalanine to produce more intermediate metabolite phenylpyruvic acid, which can be transformed to D-PLA by D-lactate dehydrogenase | + | Our project uses phenylalanine aminotransferase (PheATs) to catalyze the substrate phenylalanine to produce more intermediate metabolite phenylpyruvic acid, which can be transformed to D-PLA by D-lactate dehydrogenase. |
− | [[File:T--FJNU-China--Fig.2_PCR_amplification_for_Tyrb_.png|250px|thumb|center|Fig.2 PCR amplification for Tyrb.]] | + | [[File:T--FJNU-China--Fig.2_PCR_amplification_for_Tyrb_.png|250px|thumb|center|Fig.2 PCR amplification for ''Tyrb''.]] |
− | The picture above is an electrophoresis of the product of Tyrb amplification. We amplified PCR by Tyrb and purified the product. Finally, we used agarose gel electrophoresis to verify whether the recovered product was purified. | + | The picture above is an electrophoresis of the product of ''Tyrb'' amplification. We amplified PCR by ''Tyrb'' and purified the product. Finally, we used agarose gel electrophoresis to verify whether the recovered product was purified. |
[[File:T--FJNU-China--Fig.3_PCR_amplification_for_Tyrb_.jpg|1200px|thumb|center|Fig.3 PCR verification of Bacterial colony.]] | [[File:T--FJNU-China--Fig.3_PCR_amplification_for_Tyrb_.jpg|1200px|thumb|center|Fig.3 PCR verification of Bacterial colony.]] |
Revision as of 11:09, 15 October 2018
TyrB
Phenyllactic acid(PLA)is widely found in kimchi, honey and other foods. It is a new type of natural antibacterial substance and preservative, which can inhibit a series of gram-negative, gram-positive bacteria and fungi. There are two isomers of phenyllactic acid, and D-phenyllactic acid (D-PLA) has higher antibacterial activity. In addition, D-PLA has obvious improvement in protection of the cardiovascular system and has been widely used in the food and pharmaceutical industries. In order to enhance the production of D-PLA, we expressed D-lactate dehydrogenase BBa_K2570012, phenylalanine aminotransferaseBBa_K2570002 androcG BBa_K2570013 which is used to introduce the cofactor circulatory system and optimize the transformation system conditions to express D-PLA effectively with the phenylalanine as a substrate.
This sequence encodes for Phenylalanine aminotransferase Tyrb that is one of the two key enzymes in the anabolic pathway of phenyllactic acid biosynthesis. Phenylalanine aminotransferase (PheATs), also known as aromatic transaminase (AroATs) or tyrosine aminotransferase (TyrATs), is the key enzyme responsible for formation of the compound pyridoxa-l-5'-phosphate (PLP), and is also essential for the biosynthesis of phenylalanine and tyrosinase. We used phenylalanine transaminase from Escherichia coli 21B to deaminate the substrate phenylalanine combined with aminotransferase to produce phenylpyruvic acid that is the raw material of the target product D-PLA. Our project uses phenylalanine aminotransferase (PheATs) to catalyze the substrate phenylalanine to produce more intermediate metabolite phenylpyruvic acid, which can be transformed to D-PLA by D-lactate dehydrogenase.
The picture above is an electrophoresis of the product of Tyrb amplification. We amplified PCR by Tyrb and purified the product. Finally, we used agarose gel electrophoresis to verify whether the recovered product was purified.
The agarose gel electrophoresis map of colony PCR products is shown above. We connected recombinant plasmid vectors of pRB1s-Dldh and Tyrb by Gibson system, and later transferred them into E. coli. After that, we took the recombinant E. coli (BWpRB1s-Dldh-Tyrb ) to make PCR, and the products obtained were verified by gel electrophoresis.
The picture above is a result of the SDS-page of the Tyrb protein expressed by the engineered bacteria. We induced culture of engineered bacteria(BW/pRB1s-Dldh-Tryb), and then performed SDS-page to verify its protein expression.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 1054
- 1000COMPATIBLE WITH RFC[1000]