Difference between revisions of "User:Scmohr/Specialized Doc Score"

(→‎Additional (or Modified) Documentation Required for Specific Categories of Simple Parts)
(→‎Protein coding sequences (CDS’s) / Reporters)
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Fluorescent?  ______ (yes/no).  Luminescent?  ______(yes/no). c. Other? __________ <SPAN style= 'color:red'>'''(1)'''</span>
 
Fluorescent?  ______ (yes/no).  Luminescent?  ______(yes/no). c. Other? __________ <SPAN style= 'color:red'>'''(1)'''</span>
  
−
Spectroscopic data: (a) absorption max. ______ nm  <SPAN style= 'color:blue'>'''(2)'''</span>
+
Spectroscopic data: <SPAN style= 'color:blue'>'''(2)'''</span>
−
(b) emission max. ______ nm
+
 
−
(c) luminescent max. ______ nm
+
# absorption max. ______ nm 
−
(d) other notable spectroscopic features:  _____________
+
# emission max. ______ nm
 +
# luminescent max. ______ nm
 +
# other notable spectroscopic features:  _____________
 +
 
 +
 
 
________________________________________________________
 
________________________________________________________
  
 
Annotation to the IP-issue entry: VERY IMPORTANT FOR REPORTERS!  <SPAN style= 'color:red'>'''(1)'''</span>
 
Annotation to the IP-issue entry: VERY IMPORTANT FOR REPORTERS!  <SPAN style= 'color:red'>'''(1)'''</span>
  
−
E.C. number (if applicable)  
+
E.C. number (if applicable)
  
 
==Protein coding sequences (CDS’s) / Uncategorized==
 
==Protein coding sequences (CDS’s) / Uncategorized==

Revision as of 18:12, 2 July 2008

Additional (or Modified) Documentation Required for Specific Categories of Simple Parts

(Relative to All Parts List of 8/20/07)

Scott C. Mohr (8/21/07; updated 7/2/08)

Protein coding sequences (CDS’s) / Enzymes

ADD:

Enzyme Commission (EC) number (if assigned) (1)

Kyoto Encyclopedia of Genes and Genomes (KEGG ) reaction number (if assigned) (1)

Protein coding sequences (CDS’s) / Repressors and Activators

ADD:

Repressor? ______ (yes/no). Activator?______ (yes/no). Both?______ (yes/no) (1)

N.B., Some proteins are repressors under some circumstances and activators under other circumstances.

Regulatory ligands/effectors: _____________________ (list in a box?) (1)

Protein coding sequences (CDS’s) / Reporters

ADD:

Fluorescent? ______ (yes/no). Luminescent? ______(yes/no). c. Other? __________ (1)

Spectroscopic data: (2)

  1. absorption max. ______ nm
  2. emission max. ______ nm
  3. luminescent max. ______ nm
  4. other notable spectroscopic features: _____________


________________________________________________________

Annotation to the IP-issue entry: VERY IMPORTANT FOR REPORTERS! (1)

E.C. number (if applicable)

Protein coding sequences (CDS’s) / Uncategorized

ADD: nothing OMIT: nothing

Protein coding sequences (CDS’s) / (Binary!) Fusion Proteins (new category)

ADD:

Method used to fuse the two components. (2)

Feature annotation of the linker spanning the two fused segments (1)

Sources of both sequences. (6) [Note the high point value!]

OMIT:

E.C. number(s) – if inappropriate

Ribosome binding Sites (RBS’s)

ADD: nothing OMIT: Nothing

Terminators

ADD: nothing (best mFold structure?) OMIT: nothing

Promoters (suggested renaming of “Regulatory regions”)

ADD: •In the part “long description,” INDICATE SPECIFICALLY IF THIS IS A COMPOSITE PART (i.e. whether or not it encodes a repressor/activator binding site, and if so, the identity of the repressor/activator and co-repressor/inducer.) (2)

•Under dependencies, be sure to include chassis type, growth conditions and any other key factors that relate to the promoter function. (2)

OMIT: nothing

RNA

(suggestions needed!)

ADD: nothing OMIT: nothing

DNA

(suggestions needed!)

ADD: nothing OMIT: nothing

Conjugation

(suggestions needed!)

ADD: nothing OMIT: nothing