Difference between revisions of "User:Scmohr/Specialized Doc Score"
(New page: =Additional (or Modified) Documentation Required for Specific Categories of Simple Parts= (Relative to All Parts List of 8/20/07) Scott C. Mohr (8/21/07) Protein coding sequences (CDS...) |
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| − | =Additional (or Modified) Documentation Required for Specific Categories | + | =Additional (or Modified) Documentation Required for Specific Categories of Simple Parts= |
| − | of Simple Parts= | + | |
(Relative to All Parts List of 8/20/07) | (Relative to All Parts List of 8/20/07) | ||
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(8/21/07) | (8/21/07) | ||
| − | Protein coding sequences (CDS’s) / Repressors and Activators | + | ==Protein coding sequences (CDS’s) / Repressors and Activators== |
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Repressor? ______ (yes/no) Activator______ (yes/no) | Repressor? ______ (yes/no) Activator______ (yes/no) | ||
| − | N.B. Both choices are necessary since some proteins are repressors under some circumstances and activators under other circumstances. | + | ''N.B.,'' Both choices are necessary since some proteins are repressors under some circumstances and activators under other circumstances. |
Regulatory ligands/effects: _____________________ (list in a box?) | Regulatory ligands/effects: _____________________ (list in a box?) | ||
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E.C. number | E.C. number | ||
| − | Protein coding sequences (CDS’s) / Reporters | + | ==Protein coding sequences (CDS’s) / Reporters== |
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E.C. number | E.C. number | ||
| − | Protein coding sequences (CDS’s) / Uncategorized | + | ==Protein coding sequences (CDS’s) / Uncategorized== |
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OMIT: | OMIT: | ||
E.C. number | E.C. number | ||
| − | Protein coding sequences (CDS’s) / Fusion proteins (new category) | + | ==Protein coding sequences (CDS’s) / Fusion proteins (new category)== |
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E.C. number(s) – if inappropriate | E.C. number(s) – if inappropriate | ||
| − | Ribosome binding | + | ==Ribosome binding Sites (RBS’s)== |
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SwissProt number | SwissProt number | ||
| − | Terminators | + | ==Terminators== |
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SwissProt number | SwissProt number | ||
| − | Promoters (suggested renaming of “Regulatory regions”) | + | ==Promoters (suggested renaming of “Regulatory regions”)== |
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SwissProt number | SwissProt number | ||
| − | RNA | + | ==RNA== |
| + | (suggestions needed) | ||
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SwissProt number | SwissProt number | ||
| − | DNA | + | ==DNA== |
| + | (suggestions needed) | ||
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SwissProt number | SwissProt number | ||
| − | Conjugation (suggestions needed) | + | ==Conjugation== |
| + | (suggestions needed) | ||
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Revision as of 18:58, 1 July 2008
Contents
- 1 Additional (or Modified) Documentation Required for Specific Categories of Simple Parts
- 1.1 Protein coding sequences (CDS’s) / Repressors and Activators
- 1.2 Protein coding sequences (CDS’s) / Reporters
- 1.3 Protein coding sequences (CDS’s) / Uncategorized
- 1.4 Protein coding sequences (CDS’s) / Fusion proteins (new category)
- 1.5 Ribosome binding Sites (RBS’s)
- 1.6 Terminators
- 1.7 Promoters (suggested renaming of “Regulatory regions”)
- 1.8 RNA
- 1.9 DNA
- 1.10 Conjugation
Additional (or Modified) Documentation Required for Specific Categories of Simple Parts
(Relative to All Parts List of 8/20/07)
Scott C. Mohr (8/21/07)
Protein coding sequences (CDS’s) / Repressors and Activators
ADD:
Repressor? ______ (yes/no) Activator______ (yes/no)
N.B., Both choices are necessary since some proteins are repressors under some circumstances and activators under other circumstances.
Regulatory ligands/effects: _____________________ (list in a box?)
OMIT: E.C. number
Protein coding sequences (CDS’s) / Reporters
ADD:
Fluorescent ? yes/no b. Luminescent ? yes/no c. Other ? __________
Spectroscopic data: (a) absorption max. ______ m (b) emission max. ______ m (c) luminescent max. ______ m (d) other notable spectroscopic features: _____________ _________________________________________________ _________________________________________________ Annotation to the IP-issue entry: VERY IMPORTANT FOR REPORTERS!
OMIT: E.C. number
Protein coding sequences (CDS’s) / Uncategorized
ADD: nothing OMIT: E.C. number
Protein coding sequences (CDS’s) / Fusion proteins (new category)
ADD:
Method used to fuse the two components. Feature annotation of the linker spanning the two fused segments Sources of both sequences.
OMIT: E.C. number(s) – if inappropriate
Ribosome binding Sites (RBS’s)
ADD: nothing OMIT: E.C. number SwissProt number
Terminators
ADD: nothing OMIT: E.C. number SwissProt number
Promoters (suggested renaming of “Regulatory regions”)
ADD: •In the part “long description,” INDICATE SPECIFICALLY IF THIS IS A COMPOSITE PART (i.e. whether or not it encodes a repressor/activator binding site, and if so, the identity of the repressor/activator and co-repressor/inducer.) •Under dependencies, be sure to include chassis type, growth conditions and any other key factors that relate to the promoter function. OMIT: E.C. number SwissProt number
RNA
(suggestions needed)
ADD: nothing OMIT: E.C. number SwissProt number
DNA
(suggestions needed)
ADD: nothing OMIT: E.C. number SwissProt number
Conjugation
(suggestions needed)
ADD: nothing OMIT: E.C. number SwissProt number