Difference between revisions of "User:Scmohr/Documentation Score"

(→‎Main Page)
(→‎Hard Information Page)
 
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==Main Page==
 
==Main Page==
−
Answers the question: <SPAN style= 'color:red'>"What is it?"</span>
+
<SPAN style= 'color:red'>'''(10 points)'''</span> <SPAN style= 'color:blue'>'''(+1)'''</span>
  
−
0. Designer/iGEM team.*
+
Answers the question: <SPAN style= 'color:green'>'''"What is it?"'''</span>
−
1. Part number. (alternatively “Accession number”)*
+
−
2. Short name.*
+
−
3. Extended name. (alternatively an informative title)*
+
−
4. Origin (biological species if available, otherwise name the source: "supplied by __________" or "designed, based on ____________").*
+
−
5. A short abstract that tells (a) what the part does (function), (b) how it works (mechanism) and (c) why you made it (purpose).*
+
−
6. Dependencies: other parts, special materials, chassis, etc. (if applicable)
+
  
−
==Design Page==  
+
0. Designer/iGEM team.* <SPAN style= 'color:red'>'''(1)'''</span>
−
Answers the question: <SPAN style= 'color:red'>"How did you make it?"</span>
+
 +
1. Part number. (alternatively “Accession number”)* <SPAN style= 'color:red'>'''(0)'''</span>
 +
 +
2. Short name.* <SPAN style= 'color:red'>'''(1)'''</span>
 +
 +
3. Extended name. (alternatively an informative title)* <SPAN style= 'color:red'>'''(2)'''</span>
 +
 +
4. Origin (biological species if available, otherwise name the source: "supplied by __________" or "designed, based on ____________").* <SPAN style= 'color:red'>'''(3)'''</span>
  
−
7. Raison d’être for constructing the part.* Links to related parts from the same project. [Details in addition to those under items (5) and (6).]  
+
5. A short abstract that tells (a) what the part does (function), (b) how it works (mechanism) and (c) why you made it (purpose).* <SPAN style= 'color:red'>'''(3)'''</span>
−
8. DNA sequence without the BioBrick ends.*  
+
 
−
9. Primers used (if part was created using PCR*).  
+
6. Dependencies: other parts, special materials, cofactors, chassis, etc. <SPAN style= 'color:blue'>'''(1)'''</span> (if applicable)
−
10. Synthesis details (if part was created by DNA synthesis*).  
+
 
−
11. Special design features: (a) insertion/removal of BioBrick cloning sites, (b) codon optimization, (c) reverse orientation, (d) added tags…*  
+
==Design Page==
−
13. Graphical sequence bar with all appropriate feature annotations.  
+
<SPAN style= 'color:red'>'''(10 points)'''</span> <SPAN style= 'color:blue'>'''(+5)'''</span>
−
14. One-to-three references to literature* on the part’s biological function and uses in synthetic biology. Frequently there is a key reference reporting on the first use or design of a modified version of the protein (see entries under “Reporters”). If no published references are available, cite other sources used (such as online, open-access textbooks, Open Wetware pages, etc.)  
+
 
−
15. Difficulties/pitfalls encountered in the design process. Unworkable designs, necessary revisions etc. If everything worked exactly as planned, say so!*  
+
Answers the question: <SPAN style= 'color:green'>'''"How did you make it?"'''</span>
−
16. List all applicable patents and materials transfer agreements (MTAs). [Give link to disclaimer page on IP & iGEM issues.]  
+
 
−
[edit] Experience Page (How well does it work?)
+
7. Raison d’être for constructing the part.* <SPAN style= 'color:red'>'''(3)'''</span>
−
17. Summary of actual applications to date in originating laboratory.*  
+
Links to related parts from the same project. <SPAN style= 'color:blue'>'''(2)'''</span>
−
18. Measurements or tests of part. Include efficiency.  
+
[Details in addition to those under items (5) and (6).]
−
19. Uploaded data, figures etc. can be put on the Registry wiki and linked here.  
+
−
[edit] Hard Information Page (Reference data)
+
8. DNA sequence without the BioBrick ends.* <SPAN style= 'color:red'>'''(0)'''</span>
−
20. Sequence (FASTA format).*  
+
 
−
21. Exact source of the original sequence(s) used to construct the part. GenBank accession number (“VERSION”) and/or “GI” (aka “gi”) number if available. Otherwise any available published sequence or other source of information, including experimental sequence reads (which can be put on the Registry wiki and linked here).*  
+
9. Primers used (if part was created using PCR).* <SPAN style= 'color:red'>'''(2)'''</span>
−
22. More features (exact details of modified sequences).  
+
 
−
[edit] POSSIBLE ENHANCEMENTS
+
10. Synthesis details (if part was created by DNA synthesis*). <SPAN style= 'color:red'>'''(1)'''</span>
−
(Liven it up, use visual materials!)  
+
−
[edit] Main Page
+
11. Special design features: (a) insertion/removal of BioBrick cloning sites, (b) codon optimization, (c) reverse orientation, (d) added tags…* <SPAN style= 'color:blue'>'''(2)'''</span>
−
1. Structure cartoon(s). PDB_IDs.  
+
 
−
2. Figures relating to the function and/or physical characteristics of the part. (Include forward and reverse efficiencies if known.)  
+
13. Graphical sequence bar ''with all appropriate feature annotations.'' <SPAN style= 'color:red'>'''(1)'''</span>
−
[edit] Experience Page
+
−
3. Tables of measurements.  
+
14. One-to-three references to literature* on the part’s biological function and uses in synthetic biology. Frequently there is a key reference reporting on the first use or design of a modified version of the protein (see entries under “Reporters”). If no published references are available, cite other sources used (such as online, open-access textbooks, Open Wetware pages, etc.) <SPAN style= 'color:red'>'''(2)'''</span>
−
4. Figures depicting functional output.  
+
−
5. Links to additional databases.
+
15. Difficulties/pitfalls encountered in the design process. Unworkable designs, necessary revisions etc. If everything worked exactly as planned, say so!* <SPAN style= 'color:red'>'''(1)'''</span>
 +
 
 +
16.? List all applicable patents and materials transfer agreements (MTAs). [Give link to disclaimer page on IP & iGEM issues.] <SPAN style= 'color:blue'>'''(1)'''</span>
 +
 
 +
==Experience Page==
 +
<SPAN style= 'color:red'>'''(3 points)'''</span> <SPAN style= 'color:blue'>'''(+4)'''</span>
 +
 
 +
Answers the question: <SPAN style= 'color:green'>'''"How well does it work?"'''</span>
 +
 
 +
17. Summary of actual applications to date in originating laboratory.* <SPAN style= 'color:red'>'''(3)'''</span>
 +
 
 +
18. Measurements or tests of part. Include efficiency. <SPAN style= 'color:blue'>'''(2)'''</span>
 +
 
 +
19. Uploaded data, figures etc. can be put on the Registry wiki and linked here. <SPAN style= 'color:blue'>'''(2)'''</span>
 +
 
 +
==Hard Information Page==
 +
<SPAN style= 'color:red'>'''(2 points)'''</span> <SPAN style= 'color:blue'>'''(+1)'''</span>
 +
 
 +
Gives <SPAN style= 'color:green'>'''reference data.'''</span>
 +
 
 +
20. Sequence (FASTA format).* <SPAN style= 'color:red'>'''(0)'''</span>
 +
 +
21. Exact source of the original sequence(s) used to construct the part. GenBank accession number (“VERSION”) and/or “GI” (aka “gi”) number if available. Otherwise any available published sequence or other source of information, including experimental sequence reads (which can be put on the Registry wiki and linked here).* <SPAN style= 'color:red'>'''(2)'''</span>
 +
 
 +
22. More features (e.g., exact details of modified sequences). <SPAN style= 'color:blue'>'''(1)'''</span>
 +
 
 +
==POSSIBLE ENHANCEMENTS==
 +
 
 +
Suggestions about <SPAN style= 'color:green'>'''how to liven it up...(use visual materials!)'''</span>
 +
 
 +
===Main Page===
 +
<SPAN style= 'color:blue'>'''(+4)'''</span>
 +
 
 +
1. Structure cartoon(s). PDB_IDs. <SPAN style= 'color:blue'>'''(2)'''</span>
 +
 
 +
2. Figures relating to the function and/or physical characteristics of the part. (Include forward and reverse efficiencies if known.) <SPAN style= 'color:blue'>'''(2)'''</span>
 +
 
 +
===Experience Page===
 +
<SPAN style= 'color:blue'>'''(+5)'''</span>
 +
 
 +
3. Tables of measurements. <SPAN style= 'color:blue'>'''(3)'''</span>
 +
 
 +
4. Figures depicting functional output. <SPAN style= 'color:blue'>'''(2)'''</span>
 +
 +
5. Links to additional databases. <SPAN style= 'color:blue'>'''(2)'''</span>

Latest revision as of 18:10, 27 June 2008

ESSENTIAL ITEMS FOR ALL PARTS

Main Page

(10 points) (+1)

Answers the question: "What is it?"

0. Designer/iGEM team.* (1)

1. Part number. (alternatively “Accession number”)* (0)

2. Short name.* (1)

3. Extended name. (alternatively an informative title)* (2)

4. Origin (biological species if available, otherwise name the source: "supplied by __________" or "designed, based on ____________").* (3)

5. A short abstract that tells (a) what the part does (function), (b) how it works (mechanism) and (c) why you made it (purpose).* (3)

6. Dependencies: other parts, special materials, cofactors, chassis, etc. (1) (if applicable)

Design Page

(10 points) (+5)

Answers the question: "How did you make it?"

7. Raison d’être for constructing the part.* (3) Links to related parts from the same project. (2) [Details in addition to those under items (5) and (6).]

8. DNA sequence without the BioBrick ends.* (0)

9. Primers used (if part was created using PCR).* (2)

10. Synthesis details (if part was created by DNA synthesis*). (1)

11. Special design features: (a) insertion/removal of BioBrick cloning sites, (b) codon optimization, (c) reverse orientation, (d) added tags…* (2)

13. Graphical sequence bar with all appropriate feature annotations. (1)

14. One-to-three references to literature* on the part’s biological function and uses in synthetic biology. Frequently there is a key reference reporting on the first use or design of a modified version of the protein (see entries under “Reporters”). If no published references are available, cite other sources used (such as online, open-access textbooks, Open Wetware pages, etc.) (2)

15. Difficulties/pitfalls encountered in the design process. Unworkable designs, necessary revisions etc. If everything worked exactly as planned, say so!* (1)

16.? List all applicable patents and materials transfer agreements (MTAs). [Give link to disclaimer page on IP & iGEM issues.] (1)

Experience Page

(3 points) (+4)

Answers the question: "How well does it work?"

17. Summary of actual applications to date in originating laboratory.* (3)

18. Measurements or tests of part. Include efficiency. (2)

19. Uploaded data, figures etc. can be put on the Registry wiki and linked here. (2)

Hard Information Page

(2 points) (+1)

Gives reference data.

20. Sequence (FASTA format).* (0)

21. Exact source of the original sequence(s) used to construct the part. GenBank accession number (“VERSION”) and/or “GI” (aka “gi”) number if available. Otherwise any available published sequence or other source of information, including experimental sequence reads (which can be put on the Registry wiki and linked here).* (2)

22. More features (e.g., exact details of modified sequences). (1)

POSSIBLE ENHANCEMENTS

Suggestions about how to liven it up...(use visual materials!)

Main Page

(+4)

1. Structure cartoon(s). PDB_IDs. (2)

2. Figures relating to the function and/or physical characteristics of the part. (Include forward and reverse efficiencies if known.) (2)

Experience Page

(+5)

3. Tables of measurements. (3)

4. Figures depicting functional output. (2)

5. Links to additional databases. (2)