Difference between revisions of "Part:BBa K2541407:Design"

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===Design Notes===
 
===Design Notes===
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The secondary structure is important to the function of an RNA thermosensor. We designed the thermosensor according to the stem length, loop size and base bulge.
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The secondary structure is important to the function of an RNA-based thermosensor. We designed the thermosensor according to the stem length.
  
 
===Source===
 
===Source===
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The thermosensor sequence is not derived from any organism. We designed it on our own and synthesized this sequence from a synthesis company. Other sequence derived from iGEM Registry of Standard Biological Parts.
+
The thermosensor sequence is not derived from any organism. We designed it on our own and synthesized this sequence from a synthesis company. sfGFP_optimism sequence was designed by Overkamp W et al at 2013. Other sequences are derived from iGEM Registry of Standard Biological Parts.
  
 
===References===
 
===References===
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[2]Kortmann J, Narberhaus F. Bacterial RNA thermometers: molecular zippers and switches.[J]. Nature Reviews Microbiology, 2012, 10(4):255-65.
 
[2]Kortmann J, Narberhaus F. Bacterial RNA thermometers: molecular zippers and switches.[J]. Nature Reviews Microbiology, 2012, 10(4):255-65.
 +
 +
[3]Pédelacq J-D, Cabantous S, Tran T, Terwilliger TC, Waldo GS. 2006. Engineering and characterization of a superfolder green fluorescent protein. Nat. Biotechnol. 24:79 –88.
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[4]Overkamp W, Beilharz K, Detert O W R, et al. Benchmarking various green fluorescent protein variants in Bacillus subtilis, Streptococcus pneumoniae, and Lactococcus lactis for live cell imaging.[J]. Applied & Environmental Microbiology, 2013, 79(20):6481-6490.

Latest revision as of 07:31, 14 October 2018


Cold-repressible RNA thermosensor measurement device


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal XhoI site found at 539
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

The secondary structure is important to the function of an RNA-based thermosensor. We designed the thermosensor according to the stem length.

Source

The thermosensor sequence is not derived from any organism. We designed it on our own and synthesized this sequence from a synthesis company. sfGFP_optimism sequence was designed by Overkamp W et al at 2013. Other sequences are derived from iGEM Registry of Standard Biological Parts.

References

[1]Pertzev A V, Nicholson A W. Characterization of RNA sequence determinants and antideterminants of processing reactivity for a minimal substrate of Escherichia coli ribonuclease III[J]. Nucleic Acids Research, 2006, 34(13):3708-3721.

[2]Kortmann J, Narberhaus F. Bacterial RNA thermometers: molecular zippers and switches.[J]. Nature Reviews Microbiology, 2012, 10(4):255-65.

[3]Pédelacq J-D, Cabantous S, Tran T, Terwilliger TC, Waldo GS. 2006. Engineering and characterization of a superfolder green fluorescent protein. Nat. Biotechnol. 24:79 –88.

[4]Overkamp W, Beilharz K, Detert O W R, et al. Benchmarking various green fluorescent protein variants in Bacillus subtilis, Streptococcus pneumoniae, and Lactococcus lactis for live cell imaging.[J]. Applied & Environmental Microbiology, 2013, 79(20):6481-6490.