Difference between revisions of "User:Scmohr/ProtCode Summary"
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(→Protein Coding Sequences== ===(1663 parts)=) |
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[[Image:Glucagon.png]] | [[Image:Glucagon.png]] | ||
| − | A "ball-and-stick" model of the peptide hormone glucagon. With only 29 amino acid residues this molecule is too small to be a protein, but it shows the features of protein chains. Atom colors: carbon -- gray; oxygen -- red; nitrogen -- blue. | + | A "ball-and-stick" model of the peptide hormone glucagon. With only 29 amino acid residues this molecule is too small to be a protein, |
| + | but it shows the features of protein chains. Atom colors: carbon -- gray; oxygen -- red; nitrogen -- blue. | ||
=='''Protein Coding Sequences'''== | =='''Protein Coding Sequences'''== | ||
| + | '''(1663 parts)''' | ||
| − | "Protein-coding" parts [also called "coding sequences" (cds) or "open reading frames" (ORFs)] contain the sequence information needed to create functional protein (polypeptide) chains. Most of the parts classified in this category are protein-coding sequences only -- a few of them, however, also contain ribosome-binding (RBS) sites. | + | '''Introduction. '''"Protein-coding" parts [also called "coding sequences" (cds) or "open reading frames" (ORFs)] contain the sequence information needed to create functional protein (polypeptide) chains. Most of the parts classified in this category are protein-coding sequences only -- a few of them, however, also contain ribosome-binding (RBS) sites. Useful information about protein coding sequences can be found [https://parts.igem.org/wiki/index.php/Help:Protein_coding here]. |
| − | Because protein-coding sequences comprise the largest and most diverse group of parts, the Registry divides them into several sub-categories as given below. (Click the appropriate title below to access the summary page for that sub-category. '''''Available parts are listed on the sub-category page''''', together with links to background information) | + | Because protein-coding sequences comprise the largest and most diverse group of parts, the Registry divides them into several sub-categories as given below. (Click the appropriate title below to access the summary page for that sub-category. '''''Available parts are listed on the sub-category page''''', together with links to background information.) |
| − | '''Enzymes''' | + | ==='''Enzymes'''=== |
Enymes '''''catalyze biochemical reactions.''''' | Enymes '''''catalyze biochemical reactions.''''' | ||
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| − | '''Repressors and Activators''' | + | ==='''Repressors and Activators'''=== |
These are proteins that bind to control sequences in DNA and either '''''down- or up-regulate the expression of nearby genes.''''' (Some of them do both depending on conditions.) In eukaryotes the term "transcription factor" is often used for such proteins. | These are proteins that bind to control sequences in DNA and either '''''down- or up-regulate the expression of nearby genes.''''' (Some of them do both depending on conditions.) In eukaryotes the term "transcription factor" is often used for such proteins. | ||
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| − | '''Reporter Coding Sequences''' | + | ==='''Reporter Coding Sequences'''=== |
These are the '''''basic parts for reporter devices''''' based on fluorescent proteins and other light-generating proteins. | These are the '''''basic parts for reporter devices''''' based on fluorescent proteins and other light-generating proteins. | ||
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| − | '''Uncategorized Coding Sequences''' | + | ==='''Uncategorized Coding Sequences'''=== |
Some protein coding sequences do not fall into the three categories above -- or have not yet been categorized. They are listed in this section. | Some protein coding sequences do not fall into the three categories above -- or have not yet been categorized. They are listed in this section. | ||
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[https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Uncategorized_Coding https://static.igem.org/mediawiki/parts/7/7b/Part_icon_cds.png] [https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Uncategorized_Coding Uncategorized Protein Coding] | [https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Uncategorized_Coding https://static.igem.org/mediawiki/parts/7/7b/Part_icon_cds.png] [https://parts.igem.org/cgi/partsdb/pgroup.cgi?pgroup=Uncategorized_Coding Uncategorized Protein Coding] | ||
| − | + | =='''All Protein-Coding Regions'''== | |
| − | '''All Protein-Coding Regions''' | + | |
The old table of unsorted Protein Coding Regions plus the table of Reporter Coding Regions (also proteins). Click on the ? for general introductory information about coding regions. | The old table of unsorted Protein Coding Regions plus the table of Reporter Coding Regions (also proteins). Click on the ? for general introductory information about coding regions. | ||
Latest revision as of 18:00, 13 June 2008
A "ball-and-stick" model of the peptide hormone glucagon. With only 29 amino acid residues this molecule is too small to be a protein, but it shows the features of protein chains. Atom colors: carbon -- gray; oxygen -- red; nitrogen -- blue.
Contents
Protein Coding Sequences
(1663 parts)
Introduction. "Protein-coding" parts [also called "coding sequences" (cds) or "open reading frames" (ORFs)] contain the sequence information needed to create functional protein (polypeptide) chains. Most of the parts classified in this category are protein-coding sequences only -- a few of them, however, also contain ribosome-binding (RBS) sites. Useful information about protein coding sequences can be found here.
Because protein-coding sequences comprise the largest and most diverse group of parts, the Registry divides them into several sub-categories as given below. (Click the appropriate title below to access the summary page for that sub-category. Available parts are listed on the sub-category page, together with links to background information.)
Enzymes
Enymes catalyze biochemical reactions.
Repressors and Activators
These are proteins that bind to control sequences in DNA and either down- or up-regulate the expression of nearby genes. (Some of them do both depending on conditions.) In eukaryotes the term "transcription factor" is often used for such proteins.
Reporter Coding Sequences
These are the basic parts for reporter devices based on fluorescent proteins and other light-generating proteins. (See also the reporter devices that use them.)
Uncategorized Coding Sequences
Some protein coding sequences do not fall into the three categories above -- or have not yet been categorized. They are listed in this section.
All Protein-Coding Regions
The old table of unsorted Protein Coding Regions plus the table of Reporter Coding Regions (also proteins). Click on the ? for general introductory information about coding regions.
