Difference between revisions of "Part:BBa K2675000:Design"
Line 7: Line 7:
  
 
===Design Notes===
 
===Design Notes===
−
This sequence has been specifically optimised for Escherichia coli K12 with the help of [http://www.jcat.de/ JCAT] based on the original phi3T AimR sequence ([[Part:BBa_K2279000|BBa_K2279000]]).
+
This sequence has been specifically optimised for ''Escherichia coli'' K12 with the help of [http://www.jcat.de/ JCAT] based on the original phi3T AimR sequence ([[Part:BBa_K2279000|BBa_K2279000]]).
 
Before optimization, the CAI-Value of the original sequence was 0.1956 with a 32.4% GC-Content. The optimization allows a CAI-Value for the improved sequence of 0.8982 with a 44.1% GC-Content.
 
Before optimization, the CAI-Value of the original sequence was 0.1956 with a 32.4% GC-Content. The optimization allows a CAI-Value for the improved sequence of 0.8982 with a 44.1% GC-Content.
−
 
−
 
  
 
===Source===
 
===Source===
Line 17: Line 15:
  
 
===References===
 
===References===
 +
[1] Erez Z, Steinberger-Levy I, Shamir M, Doron S, Stokar-Avihail A, Peleg Y, Melamed S, Leavitt A, Savidor A, Albeck S, Amitai G, Sorek R. Communication between viruses guides lysis-lysogeny decisions. Nature (2017) 541, 488-493.

Revision as of 16:01, 7 October 2018


AimR of phage phi3T


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

This sequence has been specifically optimised for Escherichia coli K12 with the help of [http://www.jcat.de/ JCAT] based on the original phi3T AimR sequence (BBa_K2279000). Before optimization, the CAI-Value of the original sequence was 0.1956 with a 32.4% GC-Content. The optimization allows a CAI-Value for the improved sequence of 0.8982 with a 44.1% GC-Content.

Source

DNA synthesis

References

[1] Erez Z, Steinberger-Levy I, Shamir M, Doron S, Stokar-Avihail A, Peleg Y, Melamed S, Leavitt A, Savidor A, Albeck S, Amitai G, Sorek R. Communication between viruses guides lysis-lysogeny decisions. Nature (2017) 541, 488-493.