Difference between revisions of "Part:BBa K2500001"

 
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<p>Azurin is a bacterial redox copper protein in the family of cupredoxins with the ability to induce apoptosis in mammalian cells.</p>  
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<p>Azurin is a bacterial redox metalloprotein in the family of cupredoxins with the ability to induce apoptosis in mammalian cells.</p>  
  
 
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</figure>
 
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<h3><span class='h3bb'>Sequence and Features</span></h3>
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<partinfo>BBa_K2500001 SequenceAndFeatures</partinfo>
  
 
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<h3>Usage and Biology</h3>
 
<h3>Usage and Biology</h3>
<p>First <i>in vitro</i> studies have demonstrated that its cytotoxicity is due to its ability to raise intracellular levels of p53 by binding and stabilizing it upon internalization.<sup>1</sup> Azurin is potentially a highly versatile and promising anti-cancer agent as alternative mechanisms keep being discovered such as inhibition of angiogenesis<sup>2</sup> and cell invasion (see Table 1).<sup>3</sup></p>
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<p>First <i>in vitro</i> studies have demonstrated that the cytotoxicity of azurin is due to its ability to raise intracellular levels of p53 by binding and stabilizing it upon internalization.<sup>1</sup> Azurin is potentially a highly versatile and promising anti-cancer agent as additional mechanisms keep being discovered such as inhibition of angiogenesis<sup>2</sup> and cell invasion (see Table 1).<sup>3</sup></p>
  
<p>CATE releases azurin via controlled cell lysis. We therefore removed the native signal peptide which is part of the pre-protein form of azurin as no intracellular targeting to the bacterial cell surface is required.</p>
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<p>CATE transports azurin to tumor cells and releases it via controlled cell lysis. We therefore removed the native signal peptide which is part of the pre-protein form of azurin as no intracellular targeting to the bacterial cell surface is required.</p>
  
 
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   <td>non-receptor tyrosine kinases (FAK, Src)</td>
 
   <td>non-receptor tyrosine kinases (FAK, Src)</td>
 
   <td>Decreases the cancer invasiveness. Specifically, decreases the hyper-phosphorylation of non-receptor tyrosine kinases associated to P- cadherin overexpression (Bernandes et al).</td>
 
   <td>Decreases the cancer invasiveness. Specifically, decreases the hyper-phosphorylation of non-receptor tyrosine kinases associated to P- cadherin overexpression (Bernandes et al).</td>
   <td>In vitro: Breast cancer cells (MCF7/AZ.P.cad, SUM 149 PT)</td>
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   <td><i>In vitro</i>: Breast cancer cells (MCF7/AZ.P.cad, SUM 149 PT)</td>
 
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<b>SDS-PAGE</b>
 
<b>SDS-PAGE</b>
 
<p>Azurin and sGFP co-expression regulated by a pLux promoter was induced with AHL following which the lysate of each sample was collected and protein concentrations determined with Bradford assays. SDS-PAGE of induced sample lysates resulted in a distinctive band around 14 kD corresponding to the size of azurin. No similar bands can be observed in the negative control and mock-induced (no AHL) sample. For more details, read up on our <a href="http://2017.igem.org/Team:ETH_Zurich/Experiments/Anti_Cancer_Toxin">Anti-cancer Toxin Experiments</a>.</p>
 
<p>Azurin and sGFP co-expression regulated by a pLux promoter was induced with AHL following which the lysate of each sample was collected and protein concentrations determined with Bradford assays. SDS-PAGE of induced sample lysates resulted in a distinctive band around 14 kD corresponding to the size of azurin. No similar bands can be observed in the negative control and mock-induced (no AHL) sample. For more details, read up on our <a href="http://2017.igem.org/Team:ETH_Zurich/Experiments/Anti_Cancer_Toxin">Anti-cancer Toxin Experiments</a>.</p>
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<div width="100%">
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    <img src="https://static.igem.org/mediawiki/2017/2/22/T--ETH_Zurich--_gel_azurin_p28_vasilis.png" width="55%">
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    <img src="https://static.igem.org/mediawiki/2017/d/d6/T--ETH_Zurich--Wet_Lab_Experiments_Anti_Cancer_Toxin_fluorescent_normal_pic.png" width="40%">
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      <center> <b>Figure 2:</b> (Left) SDS-PAGE page analysis of pLux-regulated azurin expression in <i>E. coli</i> TOP10. Samples induced with AHL show a distinct band of 14 kD corresponding to the molecular weight of azurin. No similar bands can be observed for negative controls and non-induced samples. (Right) Fluorescent cultures co-expressing azurin and sGFP. - AHL: mock-induced with DMSO</center>
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</div>
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<b>Killing curves</b>
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<p>We assessed the cytotoxic potential of azurin-rich bacterial lysates on p53 (+) and p53 (-) cell lines. Literature suggests, that the main mode of action of azurin against tumors the stabilization of p53 protein. For this reason HeLa CCL-2 lc was a suitable candidate for our experiment as it consists a p53 (+) strain and additionally has been well-examined in our project (good lysate tolerance and reliable cell viability assay). Moreover, the HT-29 p53 (-) negative cell line was also tested using the AM-calcein viability assay, in order to examine the effect of azurin against p53 (-) cancer cell - lines.</p>
  
 
<center>
 
<center>
 
<figure>
 
<figure>
    <img src="https://static.igem.org/mediawiki/2017/2/22/T--ETH_Zurich--_gel_azurin_p28_vasilis.png" width="700px">
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  <img src="https://static.igem.org/mediawiki/2017/9/9e/T--ETH_Zurich--_fluouracil_tecan_data.png" width="700px">
        <figcaption><b>Figure 2:</b> SDS-PAGE page analysis of pLux-regulated azurin expression in <i>E. coli</i> TOP10. Samples induced with AHL show a distinct band of 14 kD corresponding to the molecular weight of azurin. No similar bands can be observed for negative controls and non-induced samples.</figcaption>
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      <figcaption><b>Figure 3:</b> Fluorescence data from HeLa CCL-2 lc cell cultures incubated with different amount of azurin-rich lysate. Decrease in citrine fluorescence is only detected in samples were cells were incubated with bacterial lysate containing azurin, while in ony other case (azurin free lysate and PBS) no cytotoxicity was detectable. The functionality of the viability assay was successfully evaluated by the detection of cytotoxicity on cells incubated with a lethal concnentration of 5-fluoruracil (1 mM).</figcaption>
 
</figure>
 
</figure>
 
</center>
 
</center>
  
<b>Killing curves</b>
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<p>The cytotoxic effect of our azurin-rich lysate was verified by the decrease in the citrine fluorescence, following an increase in the azurin content. From the following graph (Figure 14) even 3.2% of azurin lysate (~2 nM) is enough to detect a cytotoxic effect.</p>
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 +
 
 
<p>In collaboration with the Freiburg team, we assessed the cytotoxicity and killing dynamics of azurin in mammalian cells. The Freiburg team observed the effect of incremental doses of purified azurin on HEK239T cell survival throughout one week (triplicates). For more details, visit the <a href="http://2017.igem.org/Team:Freiburg/Collaborations">collaboration page</a> of iGEM Freiburg 2017. Meanwhile, we applied azurin-rich bacterial lysate onto different mammalian cell lines which enabled us to compare the efficacies of purified azurin and azurin-rich bacterial lysate.</p>
 
<p>In collaboration with the Freiburg team, we assessed the cytotoxicity and killing dynamics of azurin in mammalian cells. The Freiburg team observed the effect of incremental doses of purified azurin on HEK239T cell survival throughout one week (triplicates). For more details, visit the <a href="http://2017.igem.org/Team:Freiburg/Collaborations">collaboration page</a> of iGEM Freiburg 2017. Meanwhile, we applied azurin-rich bacterial lysate onto different mammalian cell lines which enabled us to compare the efficacies of purified azurin and azurin-rich bacterial lysate.</p>
  
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<figure>
 
     <img src="https://static.igem.org/mediawiki/2017/6/6d/T-FREIBURG-Azurin_Killing.png" width="700px">
 
     <img src="https://static.igem.org/mediawiki/2017/6/6d/T-FREIBURG-Azurin_Killing.png" width="700px">
         <figcaption><b>Figure 3:</b> Decreasing HEK293T cell survival due to azurin. HEK293T cells were exposed to four different concentrations of purified azurin by iGEM Freiburg 2017. After 8 days, untreated cells show constant viability of around 80 %, while cells treated with azurin show clearly decreased viability.  
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         <figcaption><b>Figure 4:</b> Decreasing HEK293T cell survival due to azurin. HEK293T cells were exposed to four different concentrations of purified azurin by iGEM Freiburg 2017. After 8 days, untreated cells show constant viability of around 80 %, while cells treated with azurin show clearly decreased viability.  
 
</figure>
 
</figure>
<center>
 
  
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<figure>
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    <img src="https://static.igem.org/mediawiki/parts/c/c7/T--ETH_Zurich--_tolerance_HELa_lc.png" width="700px">
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      <figcaption><b>Figure 5:</b> Pictures of HeLa CCL-2 lc cell cultures after 24-hour incubation with different amount of azurin-free lysate or PBS. The upper row of images depicts the fluorescence stemming from HeLa lc cells incubated with 0%, 5%, 10%, 20%, 30% bacterial lysate, while the lower row depicts the cell samples incubated with 0%, 5%, 10%, 20%, 30% PBS in order to assess if the decrease in cell viability is originating from bacterial toxins or due to nutrient depravation.</figcaption>
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</figure>
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</center>
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<br>
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<b>Determination of azurin absolute effective concentration</b>
 +
<p>We quantified the azurin content in our bacterial lysates. Freshly prepared bacterial lysate from cultures expressing azurin/gfp after induction with AHL, were analyzed via SDS - PAGE together with a concentration gradient of purified His8-azurin provided by Freiburg iGEM Team. The standard protocol for SDS-PAGE was followed. Quantitative analysis of the SDS-PAGE gel was done with a LI-COR Odyssey CLx scanner.</p>
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<figure>
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    <img src="https://static.igem.org/mediawiki/2017/8/89/T--ETH_Zurich--_SDS_good.png" width="45%">
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    <img src="https://static.igem.org/mediawiki/2017/4/4c/T--ETH_Zurich--_SDS_quantitative.png" width="45%">
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<figcaption><b>Figure 5:</b> (Left) SDS-PAGE analysis of different bacterial lysates and concnetration gradient of purified His8-azurin. The samples analyzed were equipped with a vector expressing azurin/sfGFP, or an empty vector. A detectable band corresponding to azurin's molecular weight only appears in the induced sample (AHL +) while it is absent in the mock-induced sample (AHL -). The purified azurin's molecular weight appears slightly higher due to the additional His-tag in the protein sequence. (Right) Quantitative SDS-PAGE analysis of different bacterial lysates and concnetration gradient of purified His8-azurin. The total protein content of the lysates was, 2.4 μg for all the bacterial lysate samples. The concentration gradient was consisting of 2.4 μg, 1.92 μg, 1.44 μg, 1.2 μg, 0.96 μg, 0.72 μg, 0.24 μg purified His8-azurin.</figcaption>
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<br>
 +
 +
<p>With this data at hand, we went back to the experiments where we assessed the cytotoxicity of azurin on the HeLa CCL-2 lc cells. The effective azurin concentration was then determined as 2 nM.</p>
 +
 +
<h3>Summary</h3>
 +
<ul style="list-style-type:disc">
 +
  <li>We expressed mature azurin in <i>E. coli</i></li>
 +
  <li>Our azurin is cytotoxic towards mammalian cells</i>
 +
  <li>The effective concentration of azurin against p53 + HeLa CCL-2 lc cells is 1.8 - 2 nM</li>
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 +
</ul>
 
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<h3><span class='h3bb'>Sequence and Features</span></h3>
 
<partinfo>BBa_K2500001 SequenceAndFeatures</partinfo>
 
  
 
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<h3>References</h3>
 
<h3>References</h3>
 
1. T. Yamada et al. "Bacterial redox protein azurin, tumor suppressor protein p53, and regression of cancer." Proceedings of the National Academy of Sciences (2002): 14098-14103
 
1. T. Yamada et al. "Bacterial redox protein azurin, tumor suppressor protein p53, and regression of cancer." Proceedings of the National Academy of Sciences (2002): 14098-14103
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4. T. Yamada et al. #FIX#
 
4. T. Yamada et al. #FIX#
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Latest revision as of 03:29, 2 November 2017


Azurin: Redox Originating from P. aeruginosa with Anti-Cancer Activity

Azurin is a bacterial redox metalloprotein in the family of cupredoxins with the ability to induce apoptosis in mammalian cells.

Figure 1: Crystal structure of azurin, a cytotoxic redox protein originally found in Pseudomonas aeruginosa.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Usage and Biology

First in vitro studies have demonstrated that the cytotoxicity of azurin is due to its ability to raise intracellular levels of p53 by binding and stabilizing it upon internalization.1 Azurin is potentially a highly versatile and promising anti-cancer agent as additional mechanisms keep being discovered such as inhibition of angiogenesis2 and cell invasion (see Table 1).3

CATE transports azurin to tumor cells and releases it via controlled cell lysis. We therefore removed the native signal peptide which is part of the pre-protein form of azurin as no intracellular targeting to the bacterial cell surface is required.


Molecular target Effect Tested organism
p53 Promotes apoptosis by a complex formation with the pro- apoptotic protein p53 via an - helical azurin subdomain, called p28. The stabilization of p53, leads to p53- mediated apoptotic cell death. (Yamada et al, Goto et al) In vitro: Human melanoma cells J774 macrophages MCF-7 breast-cancer cell line
In vivo: injection of azurin in immunodeficient mice harboring xenografted human breast cancer cells in the mammary fat pad
non-receptor tyrosine kinases (FAK, Src) Decreases the cancer invasiveness. Specifically, decreases the hyper-phosphorylation of non-receptor tyrosine kinases associated to P- cadherin overexpression (Bernandes et al). In vitro: Breast cancer cells (MCF7/AZ.P.cad, SUM 149 PT)
Receptor tyrosine kinase EphB2 Azurin inhibited the ephrinB2-mediated autophosphorlyation of the EphB2 tyrosine residue, thus interfering in upstream cell signaling and contributing to cancer cell growth inhibition (EphB2) In vitro: Prostate cancer cells (DU145), MCF-7 breast-cancer cell line
Chemokine receptors and receptor tyrosine kinases (EGFR) Downregulating the expression of membrane receptors involved in cell-signaling. Also, azurin exerts its anti-cancer effects depends on its route of cancer cell entry, disrupting caveolae and removing from the cell membrane selective receptors that may be overactivated. Thus, permanent activation and consequent tumorigenesis is prevented. (Bernandes et al) In vitro: Breast cancer cells (MCF7/AZ.P.cad, SUM 149 PT)

Table 1: Multimodal cytotoxic mechanisms identified for azurin.

Structure

Azurin has a size of 14'000 Daltons and consists of 8 β-strands and an α-helix. As a cupredoxin, azurin contains a type 1 copper center, where a copper ion is coordinated with two nitrogens (His-117 and His-46), two sulfur donors (Cys-112 and Met-121) and an oxygen (Gly-45) arranged in a distorted trigonal bipyramid.


The role of copper
Is copper necessary for cytotoxicity?

In most studies, azurin is purified after bacterial recombinant expression. This process includes the reconstitution of the copper inn the active site of the protein by growing the cells in media supplemented with copper [Yamada et al].4 Investigation of the relationship between the presence of the copper ion in the active site and cytotoxicity showed the following: when two versions of azurin with and without copper were tested for their growth inhibitory effect in vitro on diverse cancer cell lines, the copper impact on the cytotoxicity of azurin was rather low, but detrimental for its oxidoreductase activity.

Characterization

SDS-PAGE

Azurin and sGFP co-expression regulated by a pLux promoter was induced with AHL following which the lysate of each sample was collected and protein concentrations determined with Bradford assays. SDS-PAGE of induced sample lysates resulted in a distinctive band around 14 kD corresponding to the size of azurin. No similar bands can be observed in the negative control and mock-induced (no AHL) sample. For more details, read up on our Anti-cancer Toxin Experiments.

Figure 2: (Left) SDS-PAGE page analysis of pLux-regulated azurin expression in E. coli TOP10. Samples induced with AHL show a distinct band of 14 kD corresponding to the molecular weight of azurin. No similar bands can be observed for negative controls and non-induced samples. (Right) Fluorescent cultures co-expressing azurin and sGFP. - AHL: mock-induced with DMSO
Killing curves

We assessed the cytotoxic potential of azurin-rich bacterial lysates on p53 (+) and p53 (-) cell lines. Literature suggests, that the main mode of action of azurin against tumors the stabilization of p53 protein. For this reason HeLa CCL-2 lc was a suitable candidate for our experiment as it consists a p53 (+) strain and additionally has been well-examined in our project (good lysate tolerance and reliable cell viability assay). Moreover, the HT-29 p53 (-) negative cell line was also tested using the AM-calcein viability assay, in order to examine the effect of azurin against p53 (-) cancer cell - lines.

Figure 3: Fluorescence data from HeLa CCL-2 lc cell cultures incubated with different amount of azurin-rich lysate. Decrease in citrine fluorescence is only detected in samples were cells were incubated with bacterial lysate containing azurin, while in ony other case (azurin free lysate and PBS) no cytotoxicity was detectable. The functionality of the viability assay was successfully evaluated by the detection of cytotoxicity on cells incubated with a lethal concnentration of 5-fluoruracil (1 mM).

The cytotoxic effect of our azurin-rich lysate was verified by the decrease in the citrine fluorescence, following an increase in the azurin content. From the following graph (Figure 14) even 3.2% of azurin lysate (~2 nM) is enough to detect a cytotoxic effect.

In collaboration with the Freiburg team, we assessed the cytotoxicity and killing dynamics of azurin in mammalian cells. The Freiburg team observed the effect of incremental doses of purified azurin on HEK239T cell survival throughout one week (triplicates). For more details, visit the collaboration page of iGEM Freiburg 2017. Meanwhile, we applied azurin-rich bacterial lysate onto different mammalian cell lines which enabled us to compare the efficacies of purified azurin and azurin-rich bacterial lysate.

Figure 4: Decreasing HEK293T cell survival due to azurin. HEK293T cells were exposed to four different concentrations of purified azurin by iGEM Freiburg 2017. After 8 days, untreated cells show constant viability of around 80 %, while cells treated with azurin show clearly decreased viability.
Figure 5: Pictures of HeLa CCL-2 lc cell cultures after 24-hour incubation with different amount of azurin-free lysate or PBS. The upper row of images depicts the fluorescence stemming from HeLa lc cells incubated with 0%, 5%, 10%, 20%, 30% bacterial lysate, while the lower row depicts the cell samples incubated with 0%, 5%, 10%, 20%, 30% PBS in order to assess if the decrease in cell viability is originating from bacterial toxins or due to nutrient depravation.

Determination of azurin absolute effective concentration

We quantified the azurin content in our bacterial lysates. Freshly prepared bacterial lysate from cultures expressing azurin/gfp after induction with AHL, were analyzed via SDS - PAGE together with a concentration gradient of purified His8-azurin provided by Freiburg iGEM Team. The standard protocol for SDS-PAGE was followed. Quantitative analysis of the SDS-PAGE gel was done with a LI-COR Odyssey CLx scanner.

Figure 5: (Left) SDS-PAGE analysis of different bacterial lysates and concnetration gradient of purified His8-azurin. The samples analyzed were equipped with a vector expressing azurin/sfGFP, or an empty vector. A detectable band corresponding to azurin's molecular weight only appears in the induced sample (AHL +) while it is absent in the mock-induced sample (AHL -). The purified azurin's molecular weight appears slightly higher due to the additional His-tag in the protein sequence. (Right) Quantitative SDS-PAGE analysis of different bacterial lysates and concnetration gradient of purified His8-azurin. The total protein content of the lysates was, 2.4 μg for all the bacterial lysate samples. The concentration gradient was consisting of 2.4 μg, 1.92 μg, 1.44 μg, 1.2 μg, 0.96 μg, 0.72 μg, 0.24 μg purified His8-azurin.

With this data at hand, we went back to the experiments where we assessed the cytotoxicity of azurin on the HeLa CCL-2 lc cells. The effective azurin concentration was then determined as 2 nM.

Summary

  • We expressed mature azurin in E. coli
  • Our azurin is cytotoxic towards mammalian cells
  • The effective concentration of azurin against p53 + HeLa CCL-2 lc cells is 1.8 - 2 nM


References

1. T. Yamada et al. "Bacterial redox protein azurin, tumor suppressor protein p53, and regression of cancer." Proceedings of the National Academy of Sciences (2002): 14098-14103
2. R. Mehta et al. "A cell penetrating peptide derived from azurin inhibits angiogenesis and tumor growth by inhibiting phosphorylation of VEGFR-2, FAK and Akt." Angiogenesis (2011): 355-369
3. N. Bernardes et al. "The Bacterial Protein Azurin Impairs Invasion and FAK/Src Signaling in P-Cadherin-Overexpressing Breast Cancer Cell Models" PLOS ONE (2013): e69023
4. T. Yamada et al. #FIX#