Difference between revisions of "Part:BBa I732815"

Latest revision as of 18:17, 25 October 2007

ARL4A0604 (RBS+, TERM-)

Figure I The recognition region of Lac repressor of which the amino acid residues we will try to modify. This figure comes from 'Roberto Kopke Salinas, et al. ChemBioChem 2005, 6, 1628 - 1637

The artificial repressor comes from the results by [http://2007.igem.org/USTC/Repressor_Evolution_on_Plates Repressor Evolution on Plates]. The natural lactose repressor protein has been redesigned at Position 17, 18 of a.a. sequence, which is the composition of amino acid of recognition helix (Figure I). Standard BioBrick Prefix and Suffix are added to both ends of this part for standard assembly.

Usage and Biology

This artificial lac-repressor can bind to the specific promoters with high affinity while weakly bind to other promoters with relatively low affinity. The repression intensity is indicated in the Repression Matrix shown as below. How to acquire this repressor and how to obtain Repressor-Promoter pairs will been shown in [http://2007.igem.org/USTC/Repressor_Evolution_on_Plates This Page].

This part contains the CDS of the repressor and a strong RBS. The same repressor CDS without RBS can be found at BBa_I732115 as a Standard BioBrick part, and with both RBS and terminator at BBa_I732835 as a Standard BioBrick part.

Figure II Repression Metrix(RM):The repression matrix reveals the binding affinity of different repressor candidates with various specific promoters by different colors. The deeper the red will be, the higher the repression will appear. While the lighter the blue is the weaker the repression will show.

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 1: / Line 1: @@
 __NOTOC__
 <partinfo>BBa_I732815 short</partinfo>
-N/A
+[[Image:USTC_allen2.jpg|thumb|right|150px|'''Figure I'''  The recognition region of Lac repressor of which the amino acid residues we will try to modify. This figure comes from 'Roberto Kopke Salinas, et al. ''ChemBioChem 2005, 6, 1628 - 1637'']]
+The artificial repressor comes from the results by [http://2007.igem.org/USTC/Repressor_Evolution_on_Plates Repressor Evolution on Plates]. The natural lactose repressor protein has been redesigned at Position 17, 18 of a.a. sequence, which is the composition of  amino acid of recognition helix (Figure I). Standard BioBrick Prefix and Suffix are added to both ends of this part for standard assembly.
-<!-- Add more about the biology of this part here
 ===Usage and Biology===
-<!-- -->
+*This artificial lac-repressor can bind to the specific promoters with high affinity while weakly bind to other promoters with relatively low affinity. The repression intensity is indicated in the Repression Matrix shown as below. How to acquire this repressor and how to obtain Repressor-Promoter pairs will been shown in [http://2007.igem.org/USTC/Repressor_Evolution_on_Plates This Page].
+*This part contains the CDS of the repressor and a strong RBS. The same repressor CDS without RBS can be found at [https://parts.igem.org/wiki/index.php/Part:BBa_I732115 BBa_I732115] as a Standard BioBrick part, and with both RBS and terminator at [https://parts.igem.org/wiki/index.php/Part:BBa_I732835 BBa_I732835] as a Standard BioBrick part.
+[[Image:USTC_RepressionMatrix.png|thumb|center|500px|'''Figure II''' Repression Metrix(RM):The repression matrix reveals the binding affinity of different repressor candidates with various specific promoters by different colors. The deeper the red will be, the higher the repression will appear. While the lighter the blue is the weaker the repression will show.]]<BR clear="both"><!-- -->
 <span class='h3bb'>Sequence and Features</span>
 <partinfo>BBa_I732815 SequenceAndFeatures</partinfo>