Difference between revisions of "Part:BBa K2448012:Design"

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===Design Notes===
 
===Design Notes===
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pPsiA sequence from Sinorhizobium fredii NGR234 plasmid pNGR234b (GenBank CP000874.1), nt 1113914 to 1114314 with 2 modifications to remove a BsaI site and a PstI site
+
nucleotides 1113914 to 1114313 of Sinorhizobium fredii NGR234 plasmid pNGR234b (GenBank CP000874.1) with 2 modifications to remove a BsaI site and a PstI site to allow potential Golden Gate Assembly use and complementarity with the Universal Biosensing Chassis ([[Part:BBa_K2448023|BBa_K2448023]] and [[Part:BBa_K2448024|BBa_K2448024]]).
  
 
===Source===
 
===Source===
  
−
DNA synthesised based on the pPsiA sequence from Sinorhizobium fredii NGR234 plasmid pNGR234b (GenBank CP000874.1), nt 1113914 to 1114314 with 2 modifications to remove a BsaI site and a PstI site
+
DNA synthesis
  
 
===References===
 
===References===
 +
[1] [http://regprecise.lbl.gov/RegPrecise/regulon.jsp?regulon_id=50236 RegPrecise database]
 +
 +
[2] Solovyev V, Salamov A. Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, (2011) p. 61-78. [http://linux1.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb BPROM webserver]

Latest revision as of 22:11, 28 October 2017


pPsiA from Sinorhizobium fredii


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 345
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

nucleotides 1113914 to 1114313 of Sinorhizobium fredii NGR234 plasmid pNGR234b (GenBank CP000874.1) with 2 modifications to remove a BsaI site and a PstI site to allow potential Golden Gate Assembly use and complementarity with the Universal Biosensing Chassis (BBa_K2448023 and BBa_K2448024).

Source

DNA synthesis

References

[1] [http://regprecise.lbl.gov/RegPrecise/regulon.jsp?regulon_id=50236 RegPrecise database]

[2] Solovyev V, Salamov A. Automatic Annotation of Microbial Genomes and Metagenomic Sequences. In Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies (Ed. R.W. Li), Nova Science Publishers, (2011) p. 61-78. [http://linux1.softberry.com/berry.phtml?topic=bprom&group=programs&subgroup=gfindb BPROM webserver]