− | <html><!--- Please copy this table containing parameters for BBa_ at the end of the parametrs section ahead of the references. ---><style type="text/css">table#AutoAnnotator {border:1px solid black; width:100%; border-collapse:collapse;} th#AutoAnnotatorHeader { border:1px solid black; width:100%; background-color: rgb(221, 221, 221);} td.AutoAnnotator1col { width:100%; border:1px solid black; } span.AutoAnnotatorSequence { font-family:'Courier New', Arial; } td.AutoAnnotatorSeqNum { text-align:right; width:2%; } td.AutoAnnotatorSeqSeq { width:98% } td.AutoAnnotatorSeqFeat1 { width:3% } td.AutoAnnotatorSeqFeat2a { width:27% } td.AutoAnnotatorSeqFeat2b { width:97% } td.AutoAnnotatorSeqFeat3 { width:70% } table.AutoAnnotatorNoBorder { border:0px; width:100%; border-collapse:collapse; } table.AutoAnnotatorWithBorder { border:1px solid black; width:100%; border-collapse:collapse; } td.AutoAnnotatorOuterAmino { border:0px solid black; width:20% } td.AutoAnnotatorInnerAmino { border:1px solid black; width:50% } td.AutoAnnotatorAminoCountingOuter { border:1px solid black; width:40%; } td.AutoAnnotatorBiochemParOuter { border:1px solid black; width:60%; } td.AutoAnnotatorAminoCountingInner1 { width: 7.5% } td.AutoAnnotatorAminoCountingInner2 { width:62.5% } td.AutoAnnotatorAminoCountingInner3 { width:30% } td.AutoAnnotatorBiochemParInner1 { width: 5% } td.AutoAnnotatorBiochemParInner2 { width:55% } td.AutoAnnotatorBiochemParInner3 { width:40% } td.AutoAnnotatorCodonUsage1 { width: 3% } td.AutoAnnotatorCodonUsage2 { width:14.2% } td.AutoAnnotatorCodonUsage3 { width:13.8% } td.AutoAnnotatorAlignment1 { width: 3% } td.AutoAnnotatorAlignment2 { width: 10% } td.AutoAnnotatorAlignment3 { width: 87% } td.AutoAnnotatorLocalizationOuter {border:1px solid black; width:40%} td.AutoAnnotatorGOOuter {border:1px solid black; width:60%} td.AutoAnnotatorLocalization1 { width: 7.5% } td.AutoAnnotatorLocalization2 { width: 22.5% } td.AutoAnnotatorLocalization3 { width: 70% } td.AutoAnnotatorGO1 { width: 5% } td.AutoAnnotatorGO2 { width: 35% } td.AutoAnnotatorGO3 { width: 60% } td.AutoAnnotatorPredFeat1 { width:3% } td.AutoAnnotatorPredFeat2a { width:27% } td.AutoAnnotatorPredFeat3 { width:70% } div.AutoAnnotator_trans { position:absolute; background:rgb(11,140,143); background-color:rgba(11,140,143, 0.8); height:5px; top:100px; } div.AutoAnnotator_sec_helix { position:absolute; background:rgb(102,0,102); background-color:rgba(102,0,102, 0.8); height:5px; top:110px; } div.AutoAnnotator_sec_strand { position:absolute; background:rgb(245,170,26); background-color:rgba(245,170,26, 1); height:5px; top:110px; } div.AutoAnnotator_acc_buried { position:absolute; background:rgb(89,168,15); background-color:rgba(89,168,15, 0.8); height:5px; top:120px; } div.AutoAnnotator_acc_exposed { position:absolute; background:rgb(0, 0, 255); background-color:rgba(0, 0, 255, 0.8); height:5px; top:120px; } div.AutoAnnotator_dis { position:absolute; text-align:center; font-family:Arial,Helvetica,sans-serif; background:rgb(255, 200, 0); background-color:rgba(255, 200, 0, 1); height:16px; width:16px; top:80px; border-radius:50%; } </style><div id='AutoAnnotator_container_1509219123411'><table id="AutoAnnotator"><tr><!-- Time stamp in ms since 1/1/1970 1509219123411 --><th id="AutoAnnotatorHeader" colspan="2">Protein data table for BioBrick <a href="https://parts.igem.org/wiki/index.php?title=Part:BBa_<!------------------------Enter BioBrick number here------------------------>">BBa_<!------------------------Enter BioBrick number here------------------------></a> automatically created by the <a href="http://2013.igem.org/Team:TU-Munich/Results/AutoAnnotator">BioBrick-AutoAnnotator</a> version 1.0</th></tr><tr><td class="AutoAnnotator1col" colspan="2"><strong>Nucleotide sequence</strong> in <strong>RFC 10</strong>: (underlined part encodes the protein)<br><span class="AutoAnnotatorSequence"> CTCAAATAGCAATATAAGGACTCTCT<u>ATGAAATTT ... CTATTATAT</u>TAGCTAAGGAGAAAGAAATGAAATTTGGATTGTTCTTCCTTAACTTCATCAATTCAACAACTGTTCAAGAACAAAGTATAGTTCGCATGCAGGAAATAACGGAGTATGTTGATAAGTTGAATTTTGAACAGATTTTAGTGTATGAAAATCATTTTTCAGATAATGGTGTTGTCGGCGCTCCTCTGACTGTTTCTGGTTTTCTGCTCGGTTTAACAGAGAAAATTAAAATTGGTTCATTAAATCACATCATTACAACTCATCATCCTGTCGCCATAGCGGAGGAAGCTTGCTTATTGGATCAGTTAAGTGAAGGGAGATTTATTTTAGGGTTTAGTGATTGCGAAAAAAAAGATGAAATGCATTTTTTTAATCGCCCGGTTGAATATCAACAGCAACTATTTGAAGAGTGTTATGAAATCATTAACGATGCTTTAACAACAGGCTATTGTAATCCAGATAACGATTTTTATAGCTTCCCTAAAATATCTGTAAATCCCCATGCTTATACGCCAGGCGGACCTCGGAAATATGTAACAGCAACCAGTCATCATATTGTTGAGTGGGCGGCCAAAAAAGGTATTCCTCTCATCTTTAAGTGGGATGATTCTAATGATGTTAGATATGAATATGCTGAAAGATATAAAGCCGTTGCGGATAAATATGACGTTGACCTATCAGAGATAGACCATCAGTTAATGATATTAGTTAACTATAACGAAGATAGTAATAAAGCTAAACAAGAGACGCGTGCATTTATTAGTGATTATGTTCTTGAAATGCACCCTAATGAAAATTTCGAAAATAAACTTGAAGAAATAATTGCAGAAAACGCTGTCGGAAATTATACGGAGTGTATAACTGCGGCTAAGTTGGCAATTGAAAAGTGTGGTGCGAAAAGTGTATTGCTGTCCTTTGAACCAATGAATGATTTGATGAGCCAAAAAAATGTAATCAATATTGTTGATGATAATATTAAGAAGTACCACATGGAATATACCTAA</span><br> <strong>ORF</strong> from nucleotide position 27 to 1106 (excluding stop-codon)</td></tr><tr><td class="AutoAnnotator1col" colspan="2"><strong>Amino acid sequence:</strong> (RFC 25 scars in shown in bold, other sequence features underlined; both given below)<br><span class="AutoAnnotatorSequence"><table class="AutoAnnotatorNoBorder"><tr><td class="AutoAnnotatorSeqNum">1 <br>101 <br>201 <br>301 </td><td class="AutoAnnotatorSeqSeq">MKFGNFLLTYQPPQFSQTEVMKRLVKLGRISEECGFDTVWLLEHHFTEFGLLGNPYVAAAYLLGATKKLNVGTAAIVLPTAHPVRQLEDVNLLDQMSKGR<br>FRFGICRGLYNKDFRVFGTDMNNSRALAECWYGLIKNGMTEGYMEADNEHIKFHKVKVNPAAYSRGGAPVYVVAESASTTEWAAQFGLPMILSWIINTNE<br>KKAQLELYNEVAQEYGHDIHNIDHCLSYITSVDHDSIKAKEICRKFLGHWYDSYVNATTIFDDSDQTRGYDFNKGQWRDFVLKGHKDTNRRIDYSYEINP<br>VGTPQECIDIIQKDIDATGISNICCGFEANGTVDEIIASMKLFQSDVMPFLKEKQRSLLY*</td></tr></table></span></td></tr><tr><td class="AutoAnnotator1col" colspan="2"><strong>Sequence features:</strong> (with their position in the amino acid sequence, see the <a href="http://2013.igem.org/Team:TU-Munich/Results/Software/FeatureList">list of supported features</a>)<table class="AutoAnnotatorNoBorder"><tr><td class="AutoAnnotatorSeqFeat1"></td><td class="AutoAnnotatorSeqFeat2b">None of the supported features appeared in the sequence</td></tr></table></td></tr><tr><td class="AutoAnnotator1col" colspan="2"><strong>Amino acid composition:</strong><table class="AutoAnnotatorNoBorder"><tr><td class="AutoAnnotatorOuterAmino"><table class="AutoAnnotatorWithBorder"><tr><td class="AutoAnnotatorInnerAmino">Ala (A)</td><td class="AutoAnnotatorInnerAmino">24 (6.7%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Arg (R)</td><td class="AutoAnnotatorInnerAmino">15 (4.2%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Asn (N)</td><td class="AutoAnnotatorInnerAmino">20 (5.6%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Asp (D)</td><td class="AutoAnnotatorInnerAmino">23 (6.4%)</td></tr></table></td><td class="AutoAnnotatorOuterAmino"><table class="AutoAnnotatorWithBorder"><tr><td class="AutoAnnotatorInnerAmino">Cys (C)</td><td class="AutoAnnotatorInnerAmino">8 (2.2%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Gln (Q)</td><td class="AutoAnnotatorInnerAmino">14 (3.9%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Glu (E)</td><td class="AutoAnnotatorInnerAmino">22 (6.1%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Gly (G)</td><td class="AutoAnnotatorInnerAmino">26 (7.2%)</td></tr></table></td><td class="AutoAnnotatorOuterAmino"><table class="AutoAnnotatorWithBorder"><tr><td class="AutoAnnotatorInnerAmino">His (H)</td><td class="AutoAnnotatorInnerAmino">11 (3.1%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Ile (I)</td><td class="AutoAnnotatorInnerAmino">24 (6.7%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Leu (L)</td><td class="AutoAnnotatorInnerAmino">29 (8.1%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Lys (K)</td><td class="AutoAnnotatorInnerAmino">23 (6.4%)</td></tr></table></td><td class="AutoAnnotatorOuterAmino"><table class="AutoAnnotatorWithBorder"><tr><td class="AutoAnnotatorInnerAmino">Met (M)</td><td class="AutoAnnotatorInnerAmino">9 (2.5%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Phe (F)</td><td class="AutoAnnotatorInnerAmino">19 (5.3%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Pro (P)</td><td class="AutoAnnotatorInnerAmino">11 (3.1%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Ser (S)</td><td class="AutoAnnotatorInnerAmino">18 (5.0%)</td></tr></table></td><td class="AutoAnnotatorOuterAmino"><table class="AutoAnnotatorWithBorder"><tr><td class="AutoAnnotatorInnerAmino">Thr (T)</td><td class="AutoAnnotatorInnerAmino">20 (5.6%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Trp (W)</td><td class="AutoAnnotatorInnerAmino">6 (1.7%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Tyr (Y)</td><td class="AutoAnnotatorInnerAmino">17 (4.7%)</td></tr><tr><td class="AutoAnnotatorInnerAmino">Val (V)</td><td class="AutoAnnotatorInnerAmino">21 (5.8%)</td></tr></table></td></tr></table></td></tr><tr><td class="AutoAnnotatorAminoCountingOuter"><strong>Amino acid counting</strong><table class="AutoAnnotatorNoBorder"><tr><td class="AutoAnnotatorAminoCountingInner1"></td><td class="AutoAnnotatorAminoCountingInner2">Total number:</td><td class="AutoAnnotatorAminoCountingInner3">360</td></tr><tr><td class="AutoAnnotatorAminoCountingInner1"></td><td class="AutoAnnotatorAminoCountingInner2">Positively charged (Arg+Lys):</td><td class="AutoAnnotatorAminoCountingInner3">38 (10.6%)</td></tr><tr><td class="AutoAnnotatorAminoCountingInner1"></td><td class="AutoAnnotatorAminoCountingInner2">Negatively charged (Asp+Glu):</td><td class="AutoAnnotatorAminoCountingInner3">45 (12.5%)</td></tr><tr><td class="AutoAnnotatorAminoCountingInner1"></td><td class="AutoAnnotatorAminoCountingInner2">Aromatic (Phe+His+Try+Tyr):</td><td class="AutoAnnotatorAminoCountingInner3">53 (14.7%)</td></tr></table></td><td class="AutoAnnotatorBiochemParOuter"><strong>Biochemical parameters</strong><table class="AutoAnnotatorNoBorder"><tr><td class="AutoAnnotatorBiochemParInner1"></td><td class="AutoAnnotatorBiochemParInner2">Atomic composition:</td><td class="AutoAnnotatorBiochemParInner3">C<sub>1841</sub>H<sub>2818</sub>N<sub>490</sub>O<sub>540</sub>S<sub>17</sub></td></tr><tr><td class="AutoAnnotatorBiochemParInner1"></td><td class="AutoAnnotatorBiochemParInner2">Molecular mass [Da]:</td><td class="AutoAnnotatorBiochemParInner3">41000.6</td></tr><tr><td class="AutoAnnotatorBiochemParInner1"></td><td class="AutoAnnotatorBiochemParInner2">Theoretical pI:</td><td class="AutoAnnotatorBiochemParInner3">5.90</td></tr><tr><td class="AutoAnnotatorBiochemParInner1"></td><td class="AutoAnnotatorBiochemParInner2">Extinction coefficient at 280 nm [M<sup>-1</sup> cm<sup>-1</sup>]:</td><td class="AutoAnnotatorBiochemParInner3">58330 / 58830 (all Cys red/ox)</td></tr></table></td></tr><tr><td class="AutoAnnotator1col" colspan="2"><strong>Plot for hydrophobicity, charge, predicted secondary structure, solvent accessability, transmembrane helices and disulfid bridges</strong> <input type='button' id='hydrophobicity_charge_button' onclick='show_or_hide_plot_1509219123411()' value='Show'><span id="hydrophobicity_charge_explanation"></span><div id="hydrophobicity_charge_container" style='display:none'><div id="hydrophobicity_charge_placeholder0" style="width:100%;height:150px"></div><div id="hydrophobicity_charge_placeholder1" style="width:100%;height:150px"></div></div></td></tr><tr><td class="AutoAnnotator1col" colspan="2"><strong>Codon usage</strong><table class="AutoAnnotatorNoBorder"><tr><td class="AutoAnnotatorCodonUsage1"></td><td class="AutoAnnotatorCodonUsage2">Organism:</td><td class="AutoAnnotatorCodonUsage3"><i>E. coli</i></td><td class="AutoAnnotatorCodonUsage3"><i>B. subtilis</i></td><td class="AutoAnnotatorCodonUsage3"><i>S. cerevisiae</i></td><td class="AutoAnnotatorCodonUsage3"><i>A. thaliana</i></td><td class="AutoAnnotatorCodonUsage3"><i>P. patens</i></td><td class="AutoAnnotatorCodonUsage3">Mammals</td></tr><tr><td class="AutoAnnotatorCodonUsage1"></td><td class="AutoAnnotatorCodonUsage2">Codon quality (<a href="http://en.wikipedia.org/wiki/Codon_Adaptation_Index">CAI</a>):</td><td class="AutoAnnotatorCodonUsage3">good (0.74)</td><td class="AutoAnnotatorCodonUsage3">good (0.78)</td><td class="AutoAnnotatorCodonUsage3">good (0.69)</td><td class="AutoAnnotatorCodonUsage3">good (0.76)</td><td class="AutoAnnotatorCodonUsage3">good (0.76)</td><td class="AutoAnnotatorCodonUsage3">good (0.64)</td></tr></table></td></tr><tr><td class="AutoAnnotator1col" colspan="2"><strong>Alignments</strong> (obtained from <a href='http://predictprotein.org'>PredictProtein.org</a>)<br> There were no alignments for this protein in the data base. The BLAST search was initialized and should be ready in a few hours.</td></tr><tr><th id='AutoAnnotatorHeader' colspan="2"><strong>Predictions</strong> (obtained from <a href='http://predictprotein.org'>PredictProtein.org</a>)</th></tr><tr><td class="AutoAnnotator1col" colspan="2"> There were no predictions for this protein in the data base. The prediction was initialized and should be ready in a few hours.</td><tr><td class="AutoAnnotator1col" colspan="2"> The BioBrick-AutoAnnotator was created by <a href="http://2013.igem.org/Team:TU-Munich">TU-Munich 2013</a> iGEM team. For more information please see the <a href="http://2013.igem.org/Team:TU-Munich/Results/Software">documentation</a>.<br>If you have any questions, comments or suggestions, please leave us a <a href="http://2013.igem.org/Team:TU-Munich/Results/AutoAnnotator">comment</a>.</td></tr></table></div><br><!-- IMPORTANT: DON'T REMOVE THIS LINE, OTHERWISE NOT SUPPORTED FOR IE BEFORE 9 --><!--[if lte IE 8]><script language="javascript" type="text/javascript" src="http://2013.igem.org/Team:TU-Munich/excanvas.js"></script><![endif]--><script type='text/javascript' src='http://code.jquery.com/jquery-1.10.0.min.js'></script><script type='text/javascript' src='http://2013.igem.org/Team:TU-Munich/Flot.js?action=raw&ctype=text/js'></script><script>var jqAutoAnnotator = jQuery.noConflict(true);function show_or_hide_plot_1509219123411(){hydrophobicity_datapoints = [[2.5,-0.62],[3.5,-0.44],[4.5,1.10],[5.5,1.30],[6.5,1.24],[7.5,1.68],[8.5,0.42],[9.5,-0.66],[10.5,-1.74],[11.5,-2.30],[12.5,-1.48],[13.5,-0.94],[14.5,-1.32],[15.5,-1.14],[16.5,-1.14],[17.5,-0.86],[18.5,-0.32],[19.5,-0.40],[20.5,-1.16],[21.5,0.30],[22.5,0.30],[23.5,-0.86],[24.5,0.68],[25.5,1.50],[26.5,-0.16],[27.5,-0.10],[28.5,0.52],[29.5,-0.94],[30.5,-1.56],[31.5,-0.16],[32.5,-1.14],[33.5,-0.42],[34.5,-0.42],[35.5,0.14],[36.5,0.48],[37.5,0.38],[38.5,0.58],[39.5,2.04],[40.5,1.48],[41.5,0.00],[42.5,-0.46],[43.5,-0.66],[44.5,-1.56],[45.5,-1.56],[46.5,-0.36],[47.5,0.20],[48.5,0.40],[49.5,1.30],[50.5,1.92],[51.5,0.66],[52.5,0.42],[53.5,-0.60],[54.5,-0.52],[55.5,-0.08],[56.5,0.98],[57.5,1.66],[58.5,1.66],[59.5,1.58],[60.5,1.98],[61.5,1.54],[62.5,1.54],[63.5,1.66],[64.5,0.12],[65.5,-1.42],[66.5,-0.58],[67.5,-1.64],[68.5,-0.66],[69.5,0.04],[70.5,0.68],[71.5,0.28],[72.5,1.34],[73.5,1.40],[74.5,2.32],[75.5,3.22],[76.5,2.54],[77.5,2.04],[78.5,1.50],[79.5,0.02],[80.5,-1.06],[81.5,0.10],[82.5,-0.66],[83.5,-1.72],[84.5,-0.32],[85.5,-0.70],[86.5,-2.24],[87.5,-0.50],[88.5,-0.50],[89.5,-0.50],[90.5,0.96],[91.5,0.96],[92.5,-0.58],[93.5,0.50],[94.5,-0.42],[95.5,-1.96],[96.5,-1.34],[97.5,-1.54],[98.5,-1.36],[99.5,-2.10],[100.5,-0.76],[101.5,-0.76],[102.5,1.04],[103.5,0.98],[104.5,0.98],[105.5,0.34],[106.5,1.18],[107.5,0.02],[108.5,-1.18],[109.5,-1.06],[110.5,-1.68],[111.5,-1.88],[112.5,-2.52],[113.5,-0.98],[114.5,0.36],[115.5,0.98],[116.5,0.28],[117.5,0.48],[118.5,0.02],[119.5,-1.24],[120.5,-1.86],[121.5,-1.88],[122.5,-2.08],[123.5,-2.10],[124.5,-0.64],[125.5,0.42],[126.5,-0.12],[127.5,1.28],[128.5,0.74],[129.5,-0.28],[130.5,-0.72],[131.5,0.74],[132.5,1.14],[133.5,0.54],[134.5,0.10],[135.5,0.10],[136.5,-0.28],[137.5,-1.32],[138.5,-1.24],[139.5,-0.62],[140.5,-0.80],[141.5,-0.80],[142.5,-1.36],[143.5,-0.30],[144.5,-0.92],[145.5,-1.36],[146.5,-2.44],[147.5,-2.38],[148.5,-1.84],[149.5,-1.92],[150.5,-0.66],[151.5,-0.60],[152.5,-0.74],[153.5,-0.80],[154.5,-0.80],[155.5,-0.52],[156.5,-0.58],[157.5,-0.12],[158.5,-0.60],[159.5,0.54],[160.5,-0.56],[161.5,-0.02],[162.5,-0.60],[163.5,-1.04],[164.5,-1.48],[165.5,-0.86],[166.5,-1.02],[167.5,0.72],[168.5,0.54],[169.5,1.46],[170.5,1.94],[171.5,2.62],[172.5,1.08],[173.5,1.18],[174.5,0.70],[175.5,-0.30],[176.5,-0.80],[177.5,-0.24],[178.5,-0.78],[179.5,-1.32],[180.5,-0.80],[181.5,-0.30],[182.5,-0.86],[183.5,0.40],[184.5,0.50],[185.5,0.90],[186.5,0.22],[187.5,1.30],[188.5,1.64],[189.5,2.48],[190.5,1.56],[191.5,1.70],[192.5,2.22],[193.5,2.22],[194.5,0.76],[195.5,0.78],[196.5,0.26],[197.5,-1.34],[198.5,-3.02],[199.5,-3.10],[200.5,-2.60],[201.5,-2.60],[202.5,-1.14],[203.5,-1.06],[204.5,0.48],[205.5,-0.14],[206.5,-0.14],[207.5,-1.60],[208.5,-0.06],[209.5,-0.46],[210.5,-0.90],[211.5,-0.90],[212.5,-0.46],[213.5,-1.38],[214.5,-2.38],[215.5,-2.38],[216.5,-0.78],[217.5,-1.16],[218.5,-1.78],[219.5,-0.24],[220.5,-0.24],[221.5,-1.78],[222.5,-0.64],[223.5,0.82],[224.5,-0.24],[225.5,0.20],[226.5,1.74],[227.5,1.10],[228.5,0.18],[229.5,1.18],[230.5,0.74],[231.5,-0.80],[232.5,-1.36],[233.5,-1.36],[234.5,-1.30],[235.5,-1.38],[236.5,-0.38],[237.5,-0.46],[238.5,-1.00],[239.5,-1.00],[240.5,0.28],[241.5,-0.98],[242.5,-0.98],[243.5,0.28],[244.5,0.14],[245.5,-0.44],[246.5,-0.18],[247.5,0.42],[248.5,-0.40],[249.5,-1.86],[250.5,-1.94],[251.5,-1.56],[252.5,-0.54],[253.5,-0.98],[254.5,0.08],[255.5,0.10],[256.5,0.22],[257.5,0.28],[258.5,1.54],[259.5,0.48],[260.5,-0.08],[261.5,-0.10],[262.5,-1.70],[263.5,-2.96],[264.5,-2.40],[265.5,-2.60],[266.5,-2.52],[267.5,-2.08],[268.5,-2.08],[269.5,-1.38],[270.5,-1.18],[271.5,-1.88],[272.5,-1.70],[273.5,-1.70],[274.5,-2.44],[275.5,-2.64],[276.5,-2.56],[277.5,-1.92],[278.5,-0.38],[279.5,0.56],[280.5,0.68],[281.5,1.30],[282.5,0.10],[283.5,-1.52],[284.5,-2.98],[285.5,-2.34],[286.5,-2.96],[287.5,-3.22],[288.5,-3.34],[289.5,-1.74],[290.5,-2.30],[291.5,-1.86],[292.5,-1.12],[293.5,-0.48],[294.5,-2.08],[295.5,-0.48],[296.5,-0.92],[297.5,-1.08],[298.5,0.02],[299.5,0.64],[300.5,-0.40],[301.5,-0.02],[302.5,-0.40],[303.5,-1.94],[304.5,-1.36],[305.5,-0.32],[306.5,-0.70],[307.5,0.90],[308.5,2.50],[309.5,1.30],[310.5,-0.38],[311.5,-0.38],[312.5,-0.38],[313.5,-1.98],[314.5,-0.92],[315.5,-0.28],[316.5,0.34],[317.5,0.34],[318.5,0.88],[319.5,-0.18],[320.5,0.86],[321.5,1.44],[322.5,1.04],[323.5,1.12],[324.5,2.38],[325.5,0.78],[326.5,0.64],[327.5,-0.56],[328.5,-0.56],[329.5,-1.26],[330.5,0.28],[331.5,-0.78],[332.5,-0.78],[333.5,0.20],[334.5,1.24],[335.5,0.76],[336.5,1.30],[337.5,2.38],[338.5,0.70],[339.5,0.56],[340.5,0.76],[341.5,0.22],[342.5,-0.32],[343.5,-0.24],[344.5,-0.16],[345.5,-0.34],[346.5,0.04],[347.5,0.76],[348.5,2.22],[349.5,0.60],[350.5,-0.48],[351.5,-0.94],[352.5,-2.20],[353.5,-3.86],[354.5,-3.24],[355.5,-1.78],[356.5,-0.24],[357.5,0.20]];charge_datapoints = [[2.5,0.20],[3.5,0.20],[4.5,0.00],[5.5,0.00],[6.5,0.00],[7.5,0.00],[8.5,0.00],[9.5,0.00],[10.5,0.00],[11.5,0.00],[12.5,0.00],[13.5,0.00],[14.5,0.00],[15.5,0.00],[16.5,-0.20],[17.5,-0.20],[18.5,-0.20],[19.5,0.00],[20.5,0.20],[21.5,0.40],[22.5,0.40],[23.5,0.60],[24.5,0.40],[25.5,0.20],[26.5,0.40],[27.5,0.40],[28.5,0.20],[29.5,0.00],[30.5,-0.20],[31.5,-0.40],[32.5,-0.40],[33.5,-0.40],[34.5,-0.40],[35.5,-0.20],[36.5,-0.20],[37.5,-0.20],[38.5,-0.20],[39.5,0.00],[40.5,-0.20],[41.5,-0.10],[42.5,0.00],[43.5,0.00],[44.5,0.00],[45.5,0.00],[46.5,-0.10],[47.5,-0.20],[48.5,-0.20],[49.5,-0.20],[50.5,0.00],[51.5,0.00],[52.5,0.00],[53.5,0.00],[54.5,0.00],[55.5,0.00],[56.5,0.00],[57.5,0.00],[58.5,0.00],[59.5,0.00],[60.5,0.00],[61.5,0.00],[62.5,0.00],[63.5,0.00],[64.5,0.20],[65.5,0.40],[66.5,0.40],[67.5,0.40],[68.5,0.40],[69.5,0.20],[70.5,0.00],[71.5,0.00],[72.5,0.00],[73.5,0.00],[74.5,0.00],[75.5,0.00],[76.5,0.00],[77.5,0.00],[78.5,0.00],[79.5,0.10],[80.5,0.10],[81.5,0.10],[82.5,0.30],[83.5,0.30],[84.5,0.20],[85.5,0.00],[86.5,-0.20],[87.5,-0.40],[88.5,-0.40],[89.5,-0.40],[90.5,-0.20],[91.5,-0.20],[92.5,-0.20],[93.5,-0.20],[94.5,-0.20],[95.5,0.00],[96.5,0.20],[97.5,0.40],[98.5,0.40],[99.5,0.60],[100.5,0.40],[101.5,0.40],[102.5,0.20],[103.5,0.20],[104.5,0.20],[105.5,0.20],[106.5,0.20],[107.5,0.20],[108.5,0.20],[109.5,0.20],[110.5,0.00],[111.5,0.00],[112.5,0.20],[113.5,0.20],[114.5,0.00],[115.5,0.20],[116.5,0.20],[117.5,-0.20],[118.5,-0.20],[119.5,-0.20],[120.5,-0.20],[121.5,-0.20],[122.5,0.20],[123.5,0.20],[124.5,0.20],[125.5,0.20],[126.5,0.00],[127.5,-0.20],[128.5,-0.20],[129.5,-0.20],[130.5,-0.20],[131.5,0.00],[132.5,0.00],[133.5,0.20],[134.5,0.20],[135.5,0.20],[136.5,0.20],[137.5,0.20],[138.5,-0.20],[139.5,-0.20],[140.5,-0.20],[141.5,-0.20],[142.5,-0.40],[143.5,-0.20],[144.5,-0.40],[145.5,-0.40],[146.5,-0.60],[147.5,-0.30],[148.5,-0.30],[149.5,0.10],[150.5,0.10],[151.5,0.40],[152.5,0.50],[153.5,0.50],[154.5,0.50],[155.5,0.50],[156.5,0.40],[157.5,0.20],[158.5,0.20],[159.5,0.00],[160.5,0.00],[161.5,0.00],[162.5,0.20],[163.5,0.20],[164.5,0.20],[165.5,0.20],[166.5,0.20],[167.5,0.00],[168.5,0.00],[169.5,0.00],[170.5,0.00],[171.5,0.00],[172.5,-0.20],[173.5,-0.20],[174.5,-0.20],[175.5,-0.20],[176.5,-0.20],[177.5,0.00],[178.5,-0.20],[179.5,-0.20],[180.5,-0.20],[181.5,-0.20],[182.5,-0.20],[183.5,0.00],[184.5,0.00],[185.5,0.00],[186.5,0.00],[187.5,0.00],[188.5,0.00],[189.5,0.00],[190.5,0.00],[191.5,0.00],[192.5,0.00],[193.5,0.00],[194.5,0.00],[195.5,0.00],[196.5,0.00],[197.5,-0.20],[198.5,0.00],[199.5,0.20],[200.5,0.20],[201.5,0.20],[202.5,0.40],[203.5,0.00],[204.5,-0.20],[205.5,-0.20],[206.5,-0.20],[207.5,-0.40],[208.5,-0.20],[209.5,-0.20],[210.5,-0.20],[211.5,-0.40],[212.5,-0.20],[213.5,-0.20],[214.5,-0.10],[215.5,-0.30],[216.5,-0.10],[217.5,0.00],[218.5,0.00],[219.5,-0.10],[220.5,-0.10],[221.5,0.00],[222.5,-0.10],[223.5,-0.10],[224.5,-0.10],[225.5,0.10],[226.5,0.00],[227.5,0.00],[228.5,0.00],[229.5,0.00],[230.5,-0.20],[231.5,-0.10],[232.5,-0.30],[233.5,-0.30],[234.5,-0.30],[235.5,0.10],[236.5,0.00],[237.5,0.40],[238.5,0.20],[239.5,0.20],[240.5,0.00],[241.5,0.20],[242.5,0.20],[243.5,0.40],[244.5,0.40],[245.5,0.40],[246.5,0.30],[247.5,0.10],[248.5,0.10],[249.5,-0.10],[250.5,-0.10],[251.5,-0.20],[252.5,-0.20],[253.5,-0.20],[254.5,0.00],[255.5,0.00],[256.5,0.00],[257.5,0.00],[258.5,0.00],[259.5,-0.20],[260.5,-0.40],[261.5,-0.40],[262.5,-0.60],[263.5,-0.60],[264.5,-0.40],[265.5,0.00],[266.5,0.00],[267.5,0.20],[268.5,0.00],[269.5,0.00],[270.5,-0.20],[271.5,0.00],[272.5,0.00],[273.5,0.20],[274.5,0.20],[275.5,0.40],[276.5,0.00],[277.5,0.00],[278.5,0.00],[279.5,0.00],[280.5,0.00],[281.5,0.20],[282.5,0.30],[283.5,0.50],[284.5,0.30],[285.5,0.10],[286.5,0.10],[287.5,0.20],[288.5,0.20],[289.5,0.40],[290.5,0.20],[291.5,0.20],[292.5,0.00],[293.5,-0.20],[294.5,-0.40],[295.5,-0.20],[296.5,-0.20],[297.5,-0.20],[298.5,-0.20],[299.5,0.00],[300.5,0.00],[301.5,0.00],[302.5,0.00],[303.5,-0.20],[304.5,-0.20],[305.5,-0.20],[306.5,-0.40],[307.5,-0.40],[308.5,-0.20],[309.5,-0.20],[310.5,0.00],[311.5,0.00],[312.5,0.00],[313.5,-0.20],[314.5,-0.20],[315.5,-0.40],[316.5,-0.20],[317.5,-0.20],[318.5,0.00],[319.5,0.00],[320.5,0.00],[321.5,0.00],[322.5,0.00],[323.5,0.00],[324.5,0.00],[325.5,-0.20],[326.5,-0.20],[327.5,-0.20],[328.5,-0.20],[329.5,-0.20],[330.5,0.00],[331.5,-0.20],[332.5,-0.40],[333.5,-0.40],[334.5,-0.40],[335.5,-0.40],[336.5,-0.20],[337.5,0.00],[338.5,0.20],[339.5,0.20],[340.5,0.20],[341.5,0.20],[342.5,0.20],[343.5,-0.20],[344.5,-0.20],[345.5,-0.20],[346.5,-0.20],[347.5,-0.20],[348.5,0.00],[349.5,0.20],[350.5,0.00],[351.5,0.20],[352.5,0.20],[353.5,0.40],[354.5,0.20],[355.5,0.40],[356.5,0.20],[357.5,0.20]];dis_datapoints = undefined;trans_datapoints = undefined;sec_helix_datapoints = undefined;sec_strand_datapoints = undefined;acc_exposed_datapoints = undefined;acc_buried_datapoints = undefined;flot_plot_options = []; flot_plot_options[0] = {grid: {borderWidth: {top: 0,right: 0,bottom: 0,left: 0}},legend: {show: false},xaxes: [{show: true,min: 0,max: 200,ticks: [[0.5, '1'], [24.5, '25'], [49.5, '50'], [74.5, '75'], [99.5, '100'], [124.5, '125'], [149.5, '150'], [174.5, '175'], [199.5, '200']],tickLength: -5}],yaxes: [{show: true,ticks: [[0, '0'], [4.5,'hydro-<br>phobic '], [-4.5,'hydro-<br>philic ']],min: -4.5,max: +4.5,font: {size: 12,lineHeight: 14,style: 'italic',weight: 'bold',family: 'sans-serif',variant: 'small-caps',color: 'rgba(100,149,237,1)'}},{show: true,ticks: [[0, ''], [1,'positive<br> charge'], [-1,'negative<br> charge']],position: 'right',min: -1,max: 1,font: {size: 12,lineHeight: 14,style: 'italic',weight: 'bold',family: 'sans-serif',variant: 'small-caps',color: 'rgba(255,99,71,1)'}}]};number_of_plots = 2;for ( plot_num = 1 ; plot_num < number_of_plots ; plot_num ++){flot_plot_options[plot_num] = jqAutoAnnotator.extend(true, {} ,flot_plot_options[0]);flot_plot_options[plot_num].xaxes = [{min: plot_num*200,max: (plot_num + 1)*200,ticks: [ [plot_num*200 + 0.5, (plot_num*200 + 1).toString()], [plot_num*200 + 24.5, (plot_num*200 + 25).toString()], [plot_num*200 + 49.5, (plot_num*200 + 50).toString()], [plot_num*200 + 74.5, (plot_num*200 + 75).toString()], [plot_num*200 + 99.5, (plot_num*200 + 100).toString()], [plot_num*200 + 124.5, (plot_num*200 + 125).toString()], [plot_num*200 + 149.5, (plot_num*200 + 150).toString()], [plot_num*200 + 174.5, (plot_num*200 + 175).toString()], [plot_num*200 + 199.5, (plot_num*200 + 200).toString()] ],tickLength: -5}];};try {if( jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_button').val() =='Show' ){jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_container').css('display','block');jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_button').val('Hide');var description_html = '<div id=\'AutoAnnotator_plot_selectors\'>';description_html = description_html + '<br> <input type=\'checkbox\' id=\'hydrophobicity_checkbox\' checked=\'checked\'> Moving average over 5 amino acids for hydrophobicity (<img src=\'https://static.igem.org/mediawiki/2013/e/e9/TUM13_hydrophobicity_icon.png\' alt=\'blue graph\' height=\'10\'></img>)';description_html = description_html + '<br> <input type=\'checkbox\' id=\'charge_checkbox\' checked=\'checked\'> Moving average over 5 amino acids for charge (<img src=\'https://static.igem.org/mediawiki/2013/3/3e/TUM13_charge_icon.png\' alt=\'red graph\' height=\'10\'></img>)';description_html = description_html + '<br> <input type=\'checkbox\' id=\'dis_checkbox\' checked=\'checked\'> Predicted disulfid bridges (<img src=\'https://static.igem.org/mediawiki/2013/2/28/TUM13_dis_icon.png\' alt=\'yellow circle\' height=\'10\'></img>) with the number of the bridge in the center';description_html = description_html + '<br> <input type=\'checkbox\' id=\'trans_checkbox\' checked=\'checked\'> Predicted transmembrane helices (<img src=\'https://static.igem.org/mediawiki/2013/7/78/TUM13_trans_icon.png\' alt=\'turquois bars\' height=\'10\'></img>)';description_html = description_html + '<br> <input type=\'checkbox\' id=\'sec_checkbox\' checked=\'checked\'> Predicted secondary structure: Helices (<img src=\'https://static.igem.org/mediawiki/2013/b/bf/TUM13_helix_icon.png\' alt=\'violet bars\' height=\'10\'></img>) and beta-strands (<img src=\'https://static.igem.org/mediawiki/2013/b/bf/TUM13_strand_icon.png\' alt=\'yellow bars\' height=\'10\'></img>)';description_html = description_html + '<br> <input type=\'checkbox\' id=\'acc_checkbox\' checked=\'checked\'> Predicted solvent accessability: Exposed (<img src=\'https://static.igem.org/mediawiki/2013/1/16/TUM13_exposed_icon.png\' alt=\'blue bars\' height=\'10\'></img>) and buried (<img src=\'https://static.igem.org/mediawiki/2013/0/0b/TUM13_buried_icon.png\' alt=\'green bars\' height=\'10\'></img>) residues';description_html = description_html + '<br></div>';jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_explanation').html(description_html);plot_according_to_selectors_1509219123411();jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #AutoAnnotator_plot_selectors').find('input').click(plot_according_to_selectors_1509219123411);}else{jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_container').css('display','none');jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_button').val('Show');jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_explanation').html('');}}catch(err){txt='There was an error with the button controlling the visibility of the plot.\n';txt=txt+'The originating error is:\n' + err + '\n\n';alert(txt);}};function plot_according_to_selectors_1509219123411(){try{var plot_datasets = [[],[]];if(jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_checkbox').prop('checked') == true){plot_datasets[0] = { color: 'rgba(100,149,237,1)',data: hydrophobicity_datapoints,label: 'Hydrophobicity',lines: { show: true, fill: true, fillColor: 'rgba(100,149,237,0.1)' },yaxis: 1};}if(jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #charge_checkbox').prop('checked') == true){plot_datasets[1] = {color: 'rgba(255,99,71,1)',data: charge_datapoints,label: 'Charge',lines: { show: true, fill: true, fillColor: 'rgba(255,99,71,0.1)' },yaxis: 2};}for (plot_num = 0 ; plot_num < number_of_plots ; plot_num ++){jqAutoAnnotator.plot('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder'+ plot_num.toString(), plot_datasets, flot_plot_options[plot_num] );}var screen_width = jqAutoAnnotator('canvas.flot-base').width(); var pos_of_first_tick = 46;var pos_of_last_tick = screen_width - 51;var tick_diff = (screen_width - 97)/199;if(jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #dis_checkbox').prop('checked') == true){for ( j = 0 ; j < dis_datapoints.length ; j++ ){jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder' + Math.floor((dis_datapoints[j][0] - 1)/200) ).append('<div class=\'AutoAnnotator_dis\' style=\'left:' + ((pos_of_first_tick - 8 + (dis_datapoints[j][0] - 1)*tick_diff - Math.floor((dis_datapoints[j][0] - 1)/200)*200*tick_diff).toFixed(0)).toString() + 'px;\'><b>' + (j+1) + '</b></div>');jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder' + Math.floor((dis_datapoints[j][1] - 1)/200) ).append('<div class=\'AutoAnnotator_dis\' style=\'left:' + ((pos_of_first_tick - 8 + (dis_datapoints[j][1] - 1)*tick_diff - Math.floor((dis_datapoints[j][1] - 1)/200)*200*tick_diff).toFixed(0)).toString() + 'px;\'><b>' + (j+1) + '</b></div>');}}if(jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #trans_checkbox').prop('checked') == true){for ( j = 0 ; j < trans_datapoints.length ; j++ ){jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder' + Math.floor((trans_datapoints[j][0] - 1)/200) ).append('<div class=\'AutoAnnotator_trans\' style=\'width:' + (((trans_datapoints[j][1] - trans_datapoints[j][0] + 1)*tick_diff).toFixed(0)).toString() + 'px ;left:' + ((pos_of_first_tick + (trans_datapoints[j][0] - 1.5)*tick_diff - Math.floor((trans_datapoints[j][0] - 1)/200)*200*tick_diff).toFixed(0)).toString() + 'px\'></div>');}}if(jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #sec_checkbox').prop('checked') == true){for ( j = 0 ; j < sec_helix_datapoints.length ; j++ ){jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder' + Math.floor((sec_helix_datapoints[j][0] - 1)/200) ).append('<div class=\'AutoAnnotator_sec_helix\' style=\'width:' + (((sec_helix_datapoints[j][1] - sec_helix_datapoints[j][0] + 1)*tick_diff).toFixed(0)).toString() + 'px; left:' + ((pos_of_first_tick + (sec_helix_datapoints[j][0] - 1.5)*tick_diff - Math.floor((sec_helix_datapoints[j][0] - 1)/200)*200*tick_diff).toFixed(0)).toString() + 'px\'></div>');}for ( j = 0 ; j < sec_strand_datapoints.length ; j++ ){jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder' + Math.floor((sec_strand_datapoints[j][0] - 1)/200) ).append('<div class=\'AutoAnnotator_sec_strand\' style=\'width:' + (((sec_strand_datapoints[j][1] - sec_strand_datapoints[j][0] + 1)*tick_diff).toFixed(0)).toString() + 'px; left:' + ((pos_of_first_tick + (sec_strand_datapoints[j][0] - 1.5)*tick_diff - Math.floor((sec_strand_datapoints[j][0] - 1)/200)*200*tick_diff).toFixed(0)).toString() + 'px\'></div>');}}if(jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #acc_checkbox').prop('checked') == true){for ( j = 0 ; j < acc_buried_datapoints.length ; j++ ){jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder' + Math.floor((acc_buried_datapoints[j][0] - 1)/200) ).append('<div class=\'AutoAnnotator_acc_buried\' style=\'width:' + (((acc_buried_datapoints[j][1] - acc_buried_datapoints[j][0] + 1)*tick_diff).toFixed(0)).toString() + 'px; left:' + ((pos_of_first_tick + (acc_buried_datapoints[j][0] - 1.5)*tick_diff - Math.floor((acc_buried_datapoints[j][0] - 1)/200)*200*tick_diff).toFixed(0)).toString() + 'px\'></div>');}for ( j = 0 ; j < acc_exposed_datapoints.length ; j++ ){jqAutoAnnotator('#AutoAnnotator_container_1509219123411 #hydrophobicity_charge_placeholder' + Math.floor((acc_exposed_datapoints[j][0] - 1)/200) ).append('<div class=\'AutoAnnotator_acc_exposed\' style=\'width:' + (((acc_exposed_datapoints[j][1] - acc_exposed_datapoints[j][0] + 1)*tick_diff).toFixed(0)).toString() + 'px; left:' + ((pos_of_first_tick + (acc_exposed_datapoints[j][0] - 1.5)*tick_diff - Math.floor((acc_exposed_datapoints[j][0] - 1)/200)*200*tick_diff).toFixed(0)).toString() + 'px\'></div>');}}}catch(err){txt='There was an error while drawing the selected elements for the plot.\n';txt=txt+'The originating error is:\n' + err + '\n\n';throw(txt);}}</script></html>
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